Scaffold rumenHiSeq_NODE_285085_len_90052_cov_2

Basic Information
Taxon OID	2061766007 Open in IMG/M
Scaffold ID	rumenHiSeq_NODE_285085_len_90052_cov_2_123284 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2061766007 Open in IMG/M

Scaffold ID

rumenHiSeq_NODE_285085_len_90052_cov_2_123284 Open in IMG/M

Source Dataset Name

Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	90102
Total Scaffold Genes	188 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	152 (80.85%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

90102

Total Scaffold Genes

188 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

152 (80.85%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location Name	University of Illinois at Urbana - Champaign, Illinois, USA
Coordinates	Lat. (^o)	40.096	Long. (^o)	-88.2315	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Illinois at Urbana - Champaign, Illinois, USA

Coordinates

Lat. (^o)

40.096

Long. (^o)

-88.2315

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F052997	Metagenome / Metatranscriptome	141	Y
F061341	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
_HiSeq_02841230	F061341	AGGA	MSNKKKSQKVGIIRGIDLLKSSRPMQNIPFRTGVYSDKRKKREKVNKNKLDKWL
_HiSeq_02841270	F061341	AGGA	MNKKKTEKIGTISGMEILKNTRPMQDIPFRTGSFSDKRKKREKVTKNNYYKWI
_HiSeq_02841550	F041054	AGGAGG	MNVRNCTDIGVNAQYIVKRLLANQNLLKLLYYTDKDPLSHDDLTQEQIQDEVFEKLVKIVPRVGPKETAHSIIAVRIARARGLASNSEYKNVNISIEVFVPMTQWIIKDTNLRPFAIMGEVQKSLNGKKIEGLGKLTGGDFSLNFLTEEISAYEQTFVLTSYD
_HiSeq_02841570	F041054	GGAGG	MNVRNCTDIGVNAQYIVKRLLANQNLLKLLYYTDKDPLSHEDLTQEQIQNEIFEKLVKIVPRVGPKETAHSIIAVRIARARGLASNNEFKNVNISVEVFVPMTQWIIKDTNLRPFAIMGEVQKSLNGKKIEGLGKLTGGDFSLNFLTEEISAYEQTFVLTSYD
_HiSeq_02841580	F052997	GGAGG	MGYYEDVYLKRLNHYGVDWQSRIQGQREENFRRQLMKSVYYVEFEYDGIMREGELTPMRQNETKTMHYLLTDIHLDMPNGTVLFIPDKDNILCPWLIYYLEDIKASGYNRYIVLKMTHYLTWNNRQGKKCSTWAYFYGQEDNMLKDELKSRSRSKVLYTENLKLSFFIIPLNENIRKDDYLEVTQGPLTEAYVVTGYDIQSTPGVEFVSVDPQYIRDLTPPPEQTIEDNADDFYWLNHGG
_HiSeq_02841830	F061341	GGAGG	MAKKKNIKVGTISGLDVLKQTRPPQDIPFRTGSYTDKRKKREKINKNRLDKWL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold rumenHiSeq_NODE_285085_len_90052_cov_2_123284

Overview

Ecosystem & Geography

Associated Families

Sequences