Scaffold CGUI_GFCP3IQ02HW3CD

Overview

Basic Information

• Taxon OID: 2061766005
• Scaffold ID: CGUI_GFCP3IQ02HW3CD
• Source Dataset Name: Elkhorn Slough cyanobacterial mat night
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 504
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Microbial Mats → Hypersaline Mat Water → Hypersaline Mat Water Microbial Communities From Elkhorn Slough, California, Usa

Source Dataset Sampling Location

• Location Name: Elkhorn Slough, Monterey Bay, CA
• Coordinates
  • Lat. (^o): 36.82188
  • Long. (^o): -121.744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010070	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
CGUI_00943930	F010070	N/A	QMKXRGQPHLCAGLNANMYTTCIENLESILRTDKAVVYWLKNGCMHMDATGPEIVRPCPALSICSWTANLFAQPPSLVRDGVESLCPKDPKFLPTIPQEYRSLLNPAEQQNAAATGPKSF