Scaffold mhc6b_MHC6B_contig06257

Overview

Basic Information

• Taxon OID: 2051223007
• Scaffold ID: mhc6b_MHC6B_contig06257
• Source Dataset Name: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland School of Medicine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2108
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Source Dataset Sampling Location

• Location Name: Orebro University Hospital, Sweden
• Coordinates
  • Lat. (^o): 59.274717
  • Long. (^o): 15.230656

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
MHC6B_contig06257_metagene_gene_1	F105375	N/A	FQTTQHLNKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENHLALSAMISKQDGFAIYSFLFQTPDTSKGAADALVNFAMNFTDGEANIKSINKISSNIMQITFTV
MHC6B_contig06257_metagene_gene_3	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNTSNIHYEGGKFPSMLTIQLFNLEF