2051223007: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375

Overview

Basic Information

• IMG/M Taxon OID: 2051223007
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045401 | Gp0051703 | Ga0011003
• Sample Name: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41065261
• Sequencing Scaffolds: 9
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Orebro University Hospital, Sweden
• Coordinates
  • Lat. (^o): 59.274717
  • Long. (^o): 15.230656
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F050793	Metagenome	145	N
F056623	Metagenome	137	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F076064	Metagenome	118	N
F077320	Metagenome	117	N
F080163	Metagenome	115	N
F092228	Metagenome	107	N
F094005	Metagenome / Metatranscriptome	106	N
F101193	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
mhc6b_MHC6B_contig01984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	10568
mhc6b_MHC6B_contig02440	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	2028
mhc6b_MHC6B_contig06257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2108
mhc6b_MHC6B_contig24408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	542
mhc6b_MHC6B_contig24805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	823
mhc6b_MHC6B_contig28395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1044
mhc6b_MHC6B_contig31135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	817
mhc6b_MHC6B_contig33558	All Organisms → Viruses → Predicted Viral	1541
mhc6b_MHC6B_contig35301	All Organisms → cellular organisms → Bacteria	25737

Sequences

Scaffold ID	Protein ID	Family	Sequence
mhc6b_MHC6B_contig01984	MHC6B_contig01984_metagene_gene_5	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVKLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIAGKCDCDELLATKNFLYCYTINYILPRGLANSWVKGYLIDQLAIS
mhc6b_MHC6B_contig02440	MHC6B_contig02440_metagene_gene_4	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLSRLFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
mhc6b_MHC6B_contig06257	MHC6B_contig06257_metagene_gene_1	F105375	FQTTQHLNKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENHLALSAMISKQDGFAIYSFLFQTPDTSKGAADALVNFAMNFTDGEANIKSINKISSNIMQITFTV
mhc6b_MHC6B_contig06257	MHC6B_contig06257_metagene_gene_3	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
mhc6b_MHC6B_contig24408	MHC6B_contig24408_metagene_gene_1	F077320	MVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWEGVSAEAAESYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTTTPLP
mhc6b_MHC6B_contig24805	MHC6B_contig24805_metagene_gene_1	F056623	RGAGAPDQRNRPARRQLLHLLYAREAAALQSMTLVRAEIPAAQKRDWKPLIFPFAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
mhc6b_MHC6B_contig28395	MHC6B_contig28395_metagene_gene_1	F101193	MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETQKFRDLQEH
mhc6b_MHC6B_contig31135	MHC6B_contig31135_metagene_gene_2	F050793	MRKQVLVPENVEMADIHAIPKRASKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDSLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYATQEGYEPMDVDFGQMTDEEFQQFLDAHRI
mhc6b_MHC6B_contig33558	MHC6B_contig33558_metagene_gene_1	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAVKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQYNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
mhc6b_MHC6B_contig35301	MHC6B_contig35301_metagene_gene_2	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
mhc6b_MHC6B_contig35301	MHC6B_contig35301_metagene_gene_5	F080163	MKTIKFLQESFQQEISFKYSYNRDTIESVDLRINRHNIRSFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESISDFDKIIFVIITYMKTYFDFCKDSSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLKREVLDSEIELLQEKLDLIREEICELIGVDTDLQKKGMKKIIFSI
mhc6b_MHC6B_contig35301	MHC6B_contig35301_metagene_gene_6	F060985	MKKAKNDFTIEIRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFMGYGEYHTIRGNRWLKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
mhc6b_MHC6B_contig35301	MHC6B_contig35301_metagene_gene_7	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
mhc6b_MHC6B_contig35301	MHC6B_contig35301_metagene_gene_8	F094005	MEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE