NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GB_4MN_4MetaGsffNew_c5723

Scaffold GB_4MN_4MetaGsffNew_c5723


Overview

Basic Information
Taxon OID2049941003 Open in IMG/M
Scaffold IDGB_4MN_4MetaGsffNew_c5723 Open in IMG/M
Source Dataset NameHydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 420
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterPennsylvania State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)523
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California

Source Dataset Sampling Location
Location NameGulf of California
CoordinatesLat. (o)27.823Long. (o)-111.4Alt. (m)Depth (m)1996
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019388Metagenome / Metatranscriptome230N

Sequences

Protein IDFamilyRBSSequence
GB_4MN_00178650F019388N/ASLKGTVMRTEQNPYLVETKKGQILKFSRIDADNEAVSKQLDGDDVEVYHDGKLQYKLHGIEQGKLF

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