Scaffold MGR_F548DK202IIU16

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold MGR_F548DK202IIU16

Scaffold MGR_F548DK202IIU16

Overview

Basic Information
Taxon OID	2044078002 Open in IMG/M
Scaffold ID	MGR_F548DK202IIU16 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Illinois, Urbana-Champaign
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	513
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location
Location Name	UIUC Energy Farm, Urbana, Illinois 61801
Coordinates	Lat. (^o)	40.109	Long. (^o)	-88.204	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043428	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
MGR_1111790	F043428	N/A	FQRDYECEVECCDHASTVVATKELATLREEVAEKMPGAKTTTGSFKPAEGSKEVHVDPSSSEAKRVRIGTSLSSK

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