Scaffold MGR_F548DK201ETIKM

Overview

Basic Information

• Taxon OID: 2044078002
• Scaffold ID: MGR_F548DK201ETIKM
• Source Dataset Name: Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 502
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location

• Location Name: UIUC Energy Farm, Urbana, Illinois 61801
• Coordinates
  • Lat. (^o): 40.109
  • Long. (^o): -88.204

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033889	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
MGR_1091950	F033889	N/A	AQAGIHLPATERLTHSSLLGVTTAIFLVASSGTTSLETTPTTDAARIATNAGFLLGNAHRCGVATDRVVKVGQTIRELIKATAKDDKEQEEATDRFATFFLLTALPDDGDTKLVASCNTVTSEFQKFEKHHVAGAPATTANTAPRSPASKATGAPWPPRYRPGDRRV