Scaffold ZMB_F548DK201BR774

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ZMB_F548DK201BR774

Scaffold ZMB_F548DK201BR774

Overview

Basic Information
Taxon OID	2044078000 Open in IMG/M
Scaffold ID	ZMB_F548DK201BR774 Open in IMG/M
Source Dataset Name	Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Illinois, Urbana-Champaign
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	515
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location
Location Name	UIUC Energy Farm, Urbana, Illinois 61801
Coordinates	Lat. (^o)	40.109	Long. (^o)	-88.204	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008730	Metagenome / Metatranscriptome	329	Y

Sequences

Protein ID	Family	RBS	Sequence
ZMB_2393650	F008730	AGGA	MPSKLSEETSRNFNSMAPGLSDEARKAVKAVFDAMSTWCTEIVNN

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