Scaffold sed2_GCH9ZVC02IILY2

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold sed2_GCH9ZVC02IILY2

Scaffold sed2_GCH9ZVC02IILY2

Overview

Basic Information
Taxon OID	2043231004 Open in IMG/M
Scaffold ID	sed2_GCH9ZVC02IILY2 Open in IMG/M
Source Dataset Name	Sediment 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Soedertoern University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	502
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Source Dataset Sampling Location
Location Name	Sweden
Coordinates	Lat. (^o)	58.58333333	Long. (^o)	18.23333333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013616	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
sed2_1602890	F013616	N/A	YTEDSNYFPTHLCVSPNIWEKLGGQLDASKRPVLGYTTNGVAGQNALGRVGGMGYNDMDVMGLKLVVDNNFASNTMLVCYAPGFEIYEAQQGIISNVAAGGILARTFVYYGYFATFVAKSSFIQSIAIA

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