2043231004: Sediment 2

Overview

Basic Information

• IMG/M Taxon OID: 2043231004
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045617 | Gp0051647 | Ga0011083
• Sample Name: Sediment 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Soedertoern University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49174289
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Landsort Deep, Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Sweden
• Coordinates
  • Lat. (^o): 58.58333333
  • Long. (^o): 18.23333333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006421	Metagenome	373	Y
F013616	Metagenome / Metatranscriptome	269	Y
F040946	Metagenome / Metatranscriptome	161	N
F063186	Metagenome / Metatranscriptome	130	Y
F082572	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
sed2_GCH9ZVC01AS1MF	Not Available	502
sed2_GCH9ZVC01BJYTE	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	513
sed2_GCH9ZVC01DQ707	Not Available	558
sed2_GCH9ZVC02GCSM9	Not Available	502
sed2_GCH9ZVC02IILY2	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
sed2_GCH9ZVC01AS1MF	sed2_1537380	F082572	SQLVSICPSTQEHNTASAAVTNANNIGEDIVVLTLSMSCDTFWDYETELHVDRKQFSRKYTNRPEEEAFQTLSQFMCLHMKKHIEDELINDGKRNMLAKLEEVFPKFHIHGQTSHEILYPNDPSNSDHCRGDGKIFICTHC
sed2_GCH9ZVC01BJYTE	sed2_1712390	F063186	LRLANNFYFDPMSVTNRGGLYEMQYPFQPNIKVVGTVGLQGSNRVVLGPAKQIVAGTDLMSDFTEFQLWYDINTDTLRHRIFN
sed2_GCH9ZVC01DQ707	sed2_1693270	F006421	MPFGYPALTPAYGLGSYGRTGAAVLISSPRTKNGSQGRIYAYMKNHGQGQQYISFLLKVLGPRPSGAGPWTGI
sed2_GCH9ZVC02GCSM9	sed2_1756850	F040946	MYPKLKIESDNHETIEIETLPVDFMMYEELQGIKPASEQGMRLTIAYYYLEDKEPGNLATVKLWARRNRVKVEMVSESAEPFTEGATAG
sed2_GCH9ZVC02IILY2	sed2_1602890	F013616	YTEDSNYFPTHLCVSPNIWEKLGGQLDASKRPVLGYTTNGVAGQNALGRVGGMGYNDMDVMGLKLVVDNNFASNTMLVCYAPGFEIYEAQQGIISNVAAGGILARTFVYYGYFATFVAKSSFIQSIAIA