Scaffold LandsortDeep1200_GCH9ZVC01BGP4T

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LandsortDeep1200_GCH9ZVC01BGP4T

Scaffold LandsortDeep1200_GCH9ZVC01BGP4T

Overview

Basic Information
Taxon OID	2042536000 Open in IMG/M
Scaffold ID	LandsortDeep1200_GCH9ZVC01BGP4T Open in IMG/M
Source Dataset Name	400 m water depth
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Soedertoern University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	533
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Source Dataset Sampling Location
Location Name	Sweden
Coordinates	Lat. (^o)	58.58333333	Long. (^o)	18.23333333	Alt. (m)		Depth (m)	400
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062245	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
400m_3807980	F062245	AGGAGG	MTVCLETTIQRWNGQSGDMVNITDAPEGSTFHAVDTGAKYIFHNGGWAEDLRAIYALASV

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