2042536000: 400 m water depth

Overview

Basic Information

• IMG/M Taxon OID: 2042536000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045617 | Gp0051645 | Ga0011045
• Sample Name: 400 m water depth
• Sequencing Status: Permanent Draft
• Sequencing Center: Soedertoern University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120877052
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Landsort Deep, Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Sweden
• Coordinates
  • Lat. (^o): 58.58333333
  • Long. (^o): 18.23333333
  • Alt. (m): N/A
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032200	Metagenome / Metatranscriptome	180	N
F032237	Metagenome / Metatranscriptome	180	Y
F048060	Metagenome / Metatranscriptome	148	Y
F062245	Metagenome / Metatranscriptome	131	Y
F094907	Metagenome	105	Y
F100885	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
LandsortDeep1200_GCH9ZVC01B9KTW	Not Available	505
LandsortDeep1200_GCH9ZVC01BGP4T	Not Available	533
LandsortDeep1200_GCH9ZVC01EP4AL	Not Available	509
LandsortDeep1200_GCH9ZVC02GT8CV	Not Available	509
LandsortDeep1200_GCH9ZVC02ICZZ3	Not Available	525
LandsortDeep1200_GCH9ZVC02IG4YM	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
LandsortDeep1200_GCH9ZVC01B9KTW	400m_361320	F048060	MWAALFKAILDWLTGLAKSQTGTAGEDVSAKPGLRERLDRRLAEWKAGRGK
LandsortDeep1200_GCH9ZVC01BGP4T	400m_3807980	F062245	MTVCLETTIQRWNGQSGDMVNITDAPEGSTFHAVDTGAKYIFHNGGWAEDLRAIYALASV
LandsortDeep1200_GCH9ZVC01EP4AL	400m_2390470	F100885	MAERIEGIALMPRESRNGVYYDVEELKKFDGITVPLRVEHGGPESNIGSVTFQFDETKGQVKYEATVTDKKWQGILDNEMYQVSIGAKVLEQRHLCDEMKKKCLNSPVLGEILELSVV
LandsortDeep1200_GCH9ZVC02GT8CV	400m_1248020	F032237	MEGQNNFIDKTTSLKTVERIKFKLSPFSKGSKIEITWAFNPEDSMHVDQFLELDPDKNNILIALRGFKKMAEIELGAKILTDE
LandsortDeep1200_GCH9ZVC02ICZZ3	400m_3052530	F032200	LIDALKLWQQEFIGEIRKMEADGKRVMFHPNWTAVMLYEFGLEFGVDELSKYEPIEK
LandsortDeep1200_GCH9ZVC02IG4YM	400m_3391410	F094907	MENISDPLAFVLSRPATARGVICRLPSGKVAFPSRFYWNQPSPQPYEVWLVRPCGETDRVGYVKPLERLAGAPFQDTRAGRLGIVCYCAGQVP