Scaffold Coalbed1143_GAIGPUK01BK30H

Overview

Basic Information

• Taxon OID: 2038011002
• Scaffold ID: Coalbed1143_GAIGPUK01BK30H
• Source Dataset Name: Coalbed microbial communities from New Mexico, USA - 343
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Virginia Polytechnic Institute and State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 505
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From New Mexico, Usa

Source Dataset Sampling Location

• Location Name: New Mexico
• Coordinates
  • Lat. (^o): 36.728056
  • Long. (^o): -108.220833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000982	Metagenome / Metatranscriptome	814	Y

Sequences

Protein ID	Family	RBS	Sequence
Coalbed5_715570	F000982	AGGAG	MATLRKPTSRALRLLDHHRLRGRSYPTLRYWERLHQMLAEEAEKRGKTPPPAPLVHGDLEAAPTAEDRMERLNQQVAWADQNQLLHRVQMFFDAMPSSGWEQYDKNRR