NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACOD_contig00546

Scaffold ACOD_contig00546


Overview

Basic Information
Taxon OID2038011000 Open in IMG/M
Scaffold IDACOD_contig00546 Open in IMG/M
Source Dataset NameFungus garden microbial communities from Atta colombica in Panama - from dump top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences, DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93144
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (78.05%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Fungus Garden → Fungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama

Source Dataset Sampling Location
Location NameGamboa, Panama
CoordinatesLat. (o)9.1167Long. (o)-79.7Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071942Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
ACODT_19273620F071942GAGGMSKTSKPGEFRTPDLYYAAYLQTAGVGLLRTDREGSRVYFIFDTSLGNMEELKQAWINNTGKVAAQPYAFSIRSLKAICHMP

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