NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold WWPM1086_GHCZ7500_g1

Scaffold WWPM1086_GHCZ7500_g1


Overview

Basic Information
Taxon OID2035918001 Open in IMG/M
Scaffold IDWWPM1086_GHCZ7500_g1 Open in IMG/M
Source Dataset NameActivated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)700
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater Plasmid Pools → Activated Sludge Microbial Communities From Commune De Morges, Switzerland

Source Dataset Sampling Location
Location NameVisp, Switzerland
CoordinatesLat. (o)46.30044Long. (o)7.8594Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081940Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
WWPMV_30620F081940N/ALIEIRGQIAKKLKFWGQLGFKLIKFAAKDQYAKGAKL

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