NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FACENCT_FZOFKYN02HB1DF

Scaffold FACENCT_FZOFKYN02HB1DF


Overview

Basic Information
Taxon OID2032320003 Open in IMG/M
Scaffold IDFACENCT_FZOFKYN02HB1DF Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2-
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameNevada Desert Research Center
CoordinatesLat. (o)36.76667Long. (o)-115.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015186Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
FACENCTA_3329050F015186GGALADPAPEATLSVAEAARLLGVPEPNVRELADGEGRVPLEAVRDRVGGTAAALDLAHELANALAQAREEVGRLSGSLKEVRASNARLQREAKEATAERRRLTDEVLELRAAAEERLMLMERIEHISRVEQDLEESASELDR
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