Scaffold FACENCE_FW6223E01EVB99

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FACENCE_FW6223E01EVB99

Scaffold FACENCE_FW6223E01EVB99

Overview

Basic Information
Taxon OID	2032320002 Open in IMG/M
Scaffold ID	FACENCE_FW6223E01EVB99 Open in IMG/M
Source Dataset Name	Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	525
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location Name	FACE Site 3 Nevada Test Site Creosote
Coordinates	Lat. (^o)	36.766667	Long. (^o)	-115.95	Alt. (m)		Depth (m)	.05
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032480	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
FACENCEE_7707630	F032480	N/A	IRQRTLGKDNAMDEGHAPMAEYTALIEQLFTKRSTLVQAMVANPEQITDEQIRDLAWLQSAFAAVEAEHRRAERDTLHKEVQQRTGALPSLP

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