NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Nasutiter_Contig45313

Scaffold Nasutiter_Contig45313


Overview

Basic Information
Taxon OID2030936001 Open in IMG/M
Scaffold IDNasutiter_Contig45313 Open in IMG/M
Source Dataset NameNasutitermes corniger hindgut microbial communities from Florida, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)731
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Hindgut → P3 Segment → Termite Hindgut → Termite Hindgut Microbial Communities From Amitermes Wheeleri In The Arizona Desert And From Nasutitermes Corniger In Florida, Usa

Source Dataset Sampling Location
Location NameFlorida, USA
CoordinatesLat. (o)26.135Long. (o)-80.129Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087385Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Nasutiterm_492870F087385N/AFRQKKPGSYLLSRPSGGRVPSAQEGLTSVFEMGTGVTPPQ
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