Scaffold LTJ07As871_J07ABscf096372

Overview

Basic Information

• Taxon OID: 2025206003
• Scaffold ID: LTJ07As871_J07ABscf096372
• Source Dataset Name: Hypersaline water microbial communities from Lake Tyrrell, Victoria, Australia, sample J07AB- all scaffolds
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1935
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water → Hypersaline Water Metagenomes Of Microbial Communities From Lake Tyrrell, Victoria, Australia

Source Dataset Sampling Location

• Location Name: Lake Tyrrell, Victoria, Australia
• Coordinates
  • Lat. (^o): -35.309
  • Long. (^o): 142.7795

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062297	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
LTJ07AB_565520	F062297	GGAGG	MSIDEIEENPHQYTILAERVEDGRVVEQSVTGERRADELYDRWDESEQLHKLRVKRSQPMDDVTRQFEHSWPPTGNEPVSSDGGTDGWRTR