Scaffold YNPsite07_CeleraDRAF_scf1119010701810

Overview

Basic Information

• Taxon OID: 2022920013
• Scaffold ID: YNPsite07_CeleraDRAF_scf1119010701810
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9923
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.710087
  • Long. (^o): -110.7413395

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081941	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
YNPsite07_CeleraDRAFT_283490	F081941	N/A	VILVLYIIFNILLFGILKIESTNYIINQFFSSLEMLGILSLSLFIVSGFHFILIQLSNLPYSDYKLEITTGIFFVLNFLLSIPTGFTATQFELSPLLKLILDTIYMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVIVFSIFFYLISLETVRYSMELNILLTFTGINLLLILVIMFADLKSLLNPYPSHQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG