NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNPsite07_CeleraDRAF_scf1119010701810

Scaffold YNPsite07_CeleraDRAF_scf1119010701810


Overview

Basic Information
Taxon OID2022920013 Open in IMG/M
Scaffold IDYNPsite07_CeleraDRAF_scf1119010701810 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9923
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.710087Long. (o)-110.7413395Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081941Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
YNPsite07_CeleraDRAFT_283490F081941N/AVILVLYIIFNILLFGILKIESTNYIINQFFSSLEMLGILSLSLFIVSGFHFILIQLSNLPYSDYKLEITTGIFFVLNFLLSIPTGFTATQFELSPLLKLILDTIYMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVIVFSIFFYLISLETVRYSMELNILLTFTGINLLLILVIMFADLKSLLNPYPSHQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG

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