2022920013: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots

Overview

Basic Information

• IMG/M Taxon OID: 2022920013
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051243 | Ga0026377
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27959912
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.710087
  • Long. (^o): -110.7413395
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057782	Metagenome / Metatranscriptome	136	Y
F080677	Metagenome / Metatranscriptome	115	N
F081941	Metagenome / Metatranscriptome	114	N
F094604	Metagenome / Metatranscriptome	106	Y
F098323	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNPsite07_CeleraDRAF_65588	Not Available	680
YNPsite07_CeleraDRAF_deg1119010697304	Not Available	983
YNPsite07_CeleraDRAF_scf1119010701810	All Organisms → cellular organisms → Bacteria	9923
YNPsite07_CeleraDRAF_scf1119010702927	All Organisms → cellular organisms → Bacteria	3347

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNPsite07_CeleraDRAF_65588	YNPsite07_CeleraDRAFT_372570	F094604	MTNERITELLNVIEARQSHYAELRAIAGGALPSPWSDWHHYEPAGSIASDIVAVLEASLVGRIDLRIDPDDPVADQLISILYNKHLHPLVREAVRDFVVVGWGGIAISPFGPVRLKPEHSIAGKDWYLRRYELDVRAARQRYGKRKVFDGKSGSVLLIETLQDGKLQVRFGDAVVYSSDWDYEPRLLVGDERPKLVDGSLHGAPIGIVEQCKDLFID
YNPsite07_CeleraDRAF_deg1119010697304	YNPsite07_CeleraDRAFT_314610	F057782	LSPLLKGGEGRGEGGSYTRMPCPFGALLVTLYQFKSKAFLM
YNPsite07_CeleraDRAF_scf1119010701233	YNPsite07_CeleraDRAFT_223590	F080677	WLTSKIIVLQSPKLVRKITIGAMFLLLLAVILTPVSVDQQTTFASEARSDSTTELPIAKQSTETVPLIIKLISSLGG
YNPsite07_CeleraDRAF_scf1119010701810	YNPsite07_CeleraDRAFT_283490	F081941	VILVLYIIFNILLFGILKIESTNYIINQFFSSLEMLGILSLSLFIVSGFHFILIQLSNLPYSDYKLEITTGIFFVLNFLLSIPTGFTATQFELSPLLKLILDTIYMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVIVFSIFFYLISLETVRYSMELNILLTFTGINLLLILVIMFADLKSLLNPYPSHQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG
YNPsite07_CeleraDRAF_scf1119010702927	YNPsite07_CeleraDRAFT_377830	F098323	MLKNKSWILLVIFTLFGVINTSIPVWTQENTTTQFDNAILANNQQPVVPTGRADTSVDPDCQNLINEIVKCPSGNGTCVAEKLRKGNSLTEKAKRCVGLNSNNLDDKQKRDLINKVCLALPATSNNTNEDRIFFCQACIGRGVTKPSDWSNEDIVNKCNSSAVNGTTRKLVNRQVDKNGQVKEVLATRINVKEKPLGVARATEDNFYLTVANQLVNPFSNQSNFVFANTQSQQKTLIIEASGISNVVLGKGIEKSQGEICTFNFSPGEGWRVVIPPANGITNQGVCSTEVTIEPIVNQ