Scaffold TM1208_contig15775

Overview

Basic Information

• Taxon OID: 2021593000
• Scaffold ID: TM1208_contig15775
• Source Dataset Name: Sample 264
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1059
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Unclassified → Unclassified → Unclassified → Tigriopus Californicus → Tigriopus Californicus Microbial Communities From Ocean Beach, California, Usa

Source Dataset Sampling Location

• Location Name: Ocean Beach pier, California
• Coordinates
  • Lat. (^o): 32.7497
  • Long. (^o): -117.2574

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034188	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
TM1208A_657050	F034188	N/A	VPLLKPSEECVDIPKEVCSRSRKNPRKVQKPVVKKWCYVPSEQSGLA