2021593000: Sample 264

Overview

Basic Information

• IMG/M Taxon OID: 2021593000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045377 | Gp0051355 | Ga0011034
• Sample Name: Sample 264
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58118889
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tigriopus Californicus Microbial Communities From Ocean Beach, California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Unclassified → Unclassified → Unclassified → Tigriopus Californicus → Tigriopus Californicus Microbial Communities From Ocean Beach, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Ocean Beach pier, California
• Coordinates
  • Lat. (^o): 32.7497
  • Long. (^o): -117.2574
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000044	Metagenome / Metatranscriptome	3572	Y
F001587	Metagenome / Metatranscriptome	667	Y
F034188	Metagenome / Metatranscriptome	175	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
TM1208_contig15775	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1059
TM1208_contig48096	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
TM1208_contig15775	TM1208A_657050	F034188	VPLLKPSEECVDIPKEVCSRSRKNPRKVQKPVVKKWCYVPSEQSGLA
TM1208_contig48096	TM1208A_228200	F001587	MNHLAPLSMSRNNPGKFVGDTRCEKLPVEILWVPGCVTEEGPEECHDKTITSLLDVPEEACDLNPQKTCRFQTKLVPKLEPKHECTIIPQETCNLKFTSPQQVEKPLKTKWCQDPTSPTPDETYDESTAIAPPIQFPQ
TM1208_contig76008	TM1208A_18780	F000044	SIDFSQAQFDEESGKRCVIKDEEVQSIEKEPILECNHKDVEKCHYTYVTEFKPAQEEVCEENFEKSCQITFKQQAVEENVRKCYKPLEKVCNGQGPEECRTVYESSCTTKYVEKQPGKFVGDTKCEKLPIEICGAGCVTEEGPEECHDKTVTSLLDVPEEVCDLNPQKTCRFQTKLVPSLSPKHECTIIPQEICNLKFTSPKLVNKPLKTKWCLDESPIVPDETYDESNAGAAPIGGIGIRAQGSNNIPTYVENPFTSNQSQQQYQTA