Scaffold Qingha_contig15528

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Qingha_contig15528

Scaffold Qingha_contig15528

Overview

Basic Information
Taxon OID	2020350000 Open in IMG/M
Scaffold ID	Qingha_contig15528 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (assembled)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Illinois, Urbana-Champaign
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	645
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake

Source Dataset Sampling Location
Location Name	Qinghai Lake, Tibetan Plateau
Coordinates	Lat. (^o)	36.381	Long. (^o)	100.218	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034945	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Qinghai_162740	F034945	AGGAG	MGDRANVGIRGSDGNTVYLYLHWGGSDRHETVAKALAHAMVRDGDESYFTRIFISRVIDTDWDKETGVGFSINKLPAGGDAYDVPIYDYKKQTIGLYEESWDKAGGFVKFTDIEYPRDMYLAEFGVRGVGAYV

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