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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2020350000 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0060788 | Gp0051376 | Ga0011174 |
| Sample Name | Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (assembled) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 7447713 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 22 |
| Associated Families | 22 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Water Microbial Communities From A Tibetan Plateau Lake |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Qinghai Lake, Tibetan Plateau | |||||||
| Coordinates | Lat. (o) | 36.381 | Long. (o) | 100.218 | Alt. (m) | N/A | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002287 | Metagenome / Metatranscriptome | 574 | Y |
| F004631 | Metagenome / Metatranscriptome | 430 | Y |
| F006304 | Metagenome / Metatranscriptome | 376 | Y |
| F006590 | Metagenome / Metatranscriptome | 369 | N |
| F007413 | Metagenome / Metatranscriptome | 351 | Y |
| F010166 | Metagenome / Metatranscriptome | 307 | Y |
| F014667 | Metagenome / Metatranscriptome | 261 | Y |
| F023590 | Metagenome / Metatranscriptome | 209 | N |
| F034424 | Metagenome | 174 | N |
| F034945 | Metagenome / Metatranscriptome | 173 | Y |
| F035291 | Metagenome / Metatranscriptome | 172 | Y |
| F047053 | Metagenome / Metatranscriptome | 150 | N |
| F047392 | Metagenome / Metatranscriptome | 150 | Y |
| F055533 | Metagenome | 138 | Y |
| F057359 | Metagenome / Metatranscriptome | 136 | N |
| F057761 | Metagenome / Metatranscriptome | 136 | Y |
| F072115 | Metagenome | 121 | Y |
| F077210 | Metagenome / Metatranscriptome | 117 | Y |
| F082266 | Metagenome / Metatranscriptome | 113 | Y |
| F084867 | Metagenome / Metatranscriptome | 112 | Y |
| F100731 | Metagenome / Metatranscriptome | 102 | Y |
| F103171 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Qingha_contig00519 | Not Available | 1325 | Open in IMG/M |
| Qingha_contig03532 | All Organisms → cellular organisms → Bacteria | 5332 | Open in IMG/M |
| Qingha_contig134013 | Not Available | 559 | Open in IMG/M |
| Qingha_contig134035 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 1013 | Open in IMG/M |
| Qingha_contig140505 | Not Available | 1212 | Open in IMG/M |
| Qingha_contig148525 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2929 | Open in IMG/M |
| Qingha_contig149011 | All Organisms → cellular organisms → Bacteria | 2666 | Open in IMG/M |
| Qingha_contig153040 | Not Available | 1124 | Open in IMG/M |
| Qingha_contig153507 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1044 | Open in IMG/M |
| Qingha_contig153517 | Not Available | 930 | Open in IMG/M |
| Qingha_contig153520 | Not Available | 1321 | Open in IMG/M |
| Qingha_contig15528 | Not Available | 645 | Open in IMG/M |
| Qingha_contig155532 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium | 1600 | Open in IMG/M |
| Qingha_contig18017 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1894 | Open in IMG/M |
| Qingha_contig18513 | Not Available | 568 | Open in IMG/M |
| Qingha_contig25028 | Not Available | 979 | Open in IMG/M |
| Qingha_contig29532 | All Organisms → Viruses → Predicted Viral | 1496 | Open in IMG/M |
| Qingha_contig48016 | Not Available | 702 | Open in IMG/M |
| Qingha_contig63537 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 937 | Open in IMG/M |
| Qingha_contig68037 | Not Available | 801 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Qingha_contig00519 | Qinghai_107710 | F084867 | MAGHGRGMGIATRGGGAVESGPANKMVSETSKTSGPVMMAKGGMAKGMKAGGVAAKGMMAGGMMAKGMKAGGVAAKGIRMAGGSDEVSRM |
| Qingha_contig03532 | Qinghai_186510 | F006590 | MKTITIAETTLPIKFGMFVLGTFLRERKLKLSDLSLLGEDLLLALELAYAGVEQGYKSKLEKCPYTLQTFCDLVDKDMGGIARIMEVISNEISPPEDVNEKT |
| Qingha_contig03532 | Qinghai_186540 | F047053 | MNSKVLREKRASDYAIMEDLQKRAAGESRLMNAEETAQWDAADANFKNYTEQISRLERWNEINSESRAASDAEQSVANLPTDKREIIQSPEYQAAFMKAIAKRDLTSRESGLLKEMRGTALLLLLSRVLQVVL |
| Qingha_contig134013 | Qinghai_77340 | F023590 | MTIEQLVALKGGLLVDDTVTGTASTNYIYLVVNEDCIFTALTDVDDNNVLTEWGLATKTLTKGMVIAPASKKAFKTVTVSSGSVLLIKG |
| Qingha_contig134035 | Qinghai_209430 | F047392 | LKAIVTMPSICRFVFAILIASLGVAATAGRVAAEEAKGSGQPANQIGLVHDHDPVKYAGHVLFFVEGALVGHDRLTQTWSIVPREEAEFEHAFKIETHAIHSDAEEGKPSFVGRNNFKRDHEDSVRYELFHQDEDRGLVLDAIQVDGKPQEIDHETEHYIFPGSLEIGTKWLSEPVTSSLPGTCQLEVIGSEIYNGTNCWVVSSTRQPKKNPLMKNSETMRKTARFLLIP |
| Qingha_contig140505 | Qinghai_29200 | F034424 | MDILERGNYTNTLLDKLGDDEREHFHKVVKGAGLMEQFKLKPQTNNKIKELGARFKVLRGQFLAGNNAPTLISELRSIVLLFIEKGVIQKQDGYDLLKELS |
| Qingha_contig147507 | Qinghai_41500 | F100731 | QFDLSFGMPRAVLPLGFKYSNQNLINIFYYKTIAEIIDKNSKLFCGYFRITPNEYANIAFNSLYFFEGQYWRLNKVIDFNPTQEGLTECEFLLAGYYPPSKSNTKPIGVGGQDTDNVFNPDFFVIDGEPKVKSIKVIGGGLDTGDNNGNSDDAVMMGTGITNFGKYNAVFAGQDVFVGQFDNVTAIRCTDFEIPEGDRVYVENYPVVGAWLGSGKVVNITNAD |
| Qingha_contig148525 | Qinghai_149560 | F057359 | MLQFGRFAIVFIDFLNPSDKRSPYPAKVAAGATVIALAELYFSIQSQTSGAEFYAMFIFIGTIICFGYFLEIQFIEKGIEAYGIGIKTPRKRNPPKAKQEPLKMDTNMRSVQLSLAIMLVLGVSCVNAQNNHFMAYNTVSFAKIDNKMLERSYYSEADEGFTVDTISYKLLSGIDLWDGYSRTTYDNTLFMTYGTQNFVYLKEISLWTYKGRYYNYHDYLKYLTKYVKRNFLNKNT |
| Qingha_contig149011 | Qinghai_65450 | F010166 | MDMQSYEDWQQHNAYEGSIEEVTWRDSDLLTLPWEATYMTDEIPEGNDWNTFATQNKKALEAMYKKWGVPKDGSLHYMSIRPKLTKRLSSLLAPYVHMQFNYNFLKLTPGCSLMWHFDTYATFVKFNNISEGNVHNVCRTVIMMNDWDRGQVLQVGDAVYTHWQAGDTYTWKGDTWHGMSNFGPSDCVVSQITFWMKMTNIPNDKRLLEYGSAFQYKTNRLQVYFL |
| Qingha_contig153040 | Qinghai_240840 | F006304 | MAKLSIAEKYKQLKRQTERAGMSISEKNRKLIVKRKRKING |
| Qingha_contig153507 | Qinghai_41760 | F077210 | LLVVRGSACEFYEQVRGIISVEVPGTLGRTFSYYGYVATFISDGSMVKSIAIS |
| Qingha_contig153517 | Qinghai_101480 | F035291 | GHWLLIRDGQPETDCSHQWHQGPADHLAACLADRWQTLSLGFVPSYCGYSDYSNTGLVGLSNYRVLTDAQSTPDPYSGILEVGYGWNGRGVVLDLRYVPEDVLETIEALEAYPLISEDDHSELEWEGVSKLWDEGVADRVRTLQHLGLCIFAARRDSAPWEIDALRDSLVEGLNEYPTSA |
| Qingha_contig153520 | Qinghai_119830 | F007413 | MDPITLLATASAIWSGLKKASQLVGEAEGIWSQLSKYCGVADQLEQCIADEKLNPKKPKLFAKQTAGNDVQEAFNAFEAEYKLNQMEAEIKFSFLYGDFCSLEGGYGGADGYAKFCNLRRKIRADRIKAKQEQQDLEREFWDNILLWVGGSTIILIGAMAIFFP |
| Qingha_contig15528 | Qinghai_162740 | F034945 | MGDRANVGIRGSDGNTVYLYLHWGGSDRHETVAKALAHAMVRDGDESYFTRIFISRVIDTDWDKETGVGFSINKLPAGGDAYDVPIYDYKKQTIGLYEESWDKAGGFVKFTDIEYPRDMYLAEFGVRGVGAYV |
| Qingha_contig155532 | Qinghai_192400 | F002287 | MSQISKLSFVDGKLGAPTSGQQTTRVLFNTIENPGTATSLTFFRSFQGLTNGQTNLTQNKLDSSESMVVKTVYLMQVTTSGSIQIFGELGLIAQQTMDIIVGNQTVIKSLPIHFNQGINGQAFDRLHENGGTVSNLSIGGTPENQRIMPIEIRLLTDIVIPPQVSFEVRINSNGAGYGTGVVVCALSGYGKIFSAG |
| Qingha_contig18017 | Qinghai_96340 | F055533 | MATKDEIKAAILKAAGNPATGALASIADDLAKAVWELDNKNSNSPAKEARVVDPKETR |
| Qingha_contig18513 | Qinghai_72970 | F072115 | FTTTMTNPTPLEVLSYLTDGTFVTVVAVLVIGFIILNALNRIGGRR |
| Qingha_contig25028 | Qinghai_163260 | F082266 | MNNEYMTNAFIDAIQNAKKTFVDTWIKDQALATPMHAFIKAQTEFTKEAMKQTNLVANAAGEAMAKDKK |
| Qingha_contig29532 | Qinghai_187670 | F014667 | MKLSQLVQSNQTFNSNTFKDLSPVMKEAINDIIGLVKNEGNLIFNFENAIDKVAKFHNVNKDDIEEYFD |
| Qingha_contig48016 | Qinghai_91610 | F057761 | VSTKFGYTGYEYIDLSPWNGPPYSYSVKVNGKMRKMMGFDEQHILDQLHPIKTTKK |
| Qingha_contig63537 | Qinghai_219140 | F004631 | MKYIKTYEEHLFEVNRPGKPYHGSKILVFDLDDTLVISSAKIKVCNKKTGDCYSLTPEEFNTYERGDHDELNFDEFKSLEIMKAGKLIEYYLKIFKEAYKIKLAVGIVTARDDQEMIYRWLKDHVGYHIDKDLIFAVNDPVHKFKGSISDRKKAAFTELINMGYNDFQFFDDDDANLRLVKSLEKEHEVKIITHKAEKRFSIR |
| Qingha_contig68037 | Qinghai_219340 | F103171 | MTDQYTKMELKAIAKFLSKVFPGFTDQDELWNLINKTQQLIKGKP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |