Scaffold Qingha_contig03532

Overview

Basic Information

• Taxon OID: 2020350000
• Scaffold ID: Qingha_contig03532
• Source Dataset Name: Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (assembled)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5332
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake

Source Dataset Sampling Location

• Location Name: Qinghai Lake, Tibetan Plateau
• Coordinates
  • Lat. (^o): 36.381
  • Long. (^o): 100.218
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006590	Metagenome / Metatranscriptome	369	N
F047053	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Qinghai_186510	F006590	N/A	MKTITIAETTLPIKFGMFVLGTFLRERKLKLSDLSLLGEDLLLALELAYAGVEQGYKSKLEKCPYTLQTFCDLVDKDMGGIARIMEVISNEISPPEDVNEKT
Qinghai_186540	F047053	N/A	MNSKVLREKRASDYAIMEDLQKRAAGESRLMNAEETAQWDAADANFKNYTEQISRLERWNEINSESRAASDAEQSVANLPTDKREIIQSPEYQAAFMKAIAKRDLTSRESGLLKEMRGTALLLLLSRVLQVVL