Scaffold PelMarPul_NODE_8799_len_4261_cov_16_710161

Overview

Basic Information

• Taxon OID: 2019105005
• Scaffold ID: PelMarPul_NODE_8799_len_4261_cov_16_710161
• Source Dataset Name: Marine microbial communities from Pulau Tioman, Malaysia
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Illumina
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4287
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Community From Pulau Tioman, Malaysia

Source Dataset Sampling Location

• Location Name: Pulau Tioman, Malaysia (South China Sea)
• Coordinates
  • Lat. (^o): 2.8
  • Long. (^o): 104.2
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009440	Metagenome	318	Y
F040177	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
MgKW_18760	F009440	AGGA	MKAKDYKSITELLEKKYKKKFYLFQDFEDIINRIKQRKDKQ
MgKW_18790	F040177	AGGA	MNNKKIEDFKKYVWSFYGEDQGLYRDFFDNNLKMEEVERAIEIRLSNMKLAFDGDSFDREIVRDIIFKMRDPKAQTEHEFKFKIERGV