2019105005: Marine microbial communities from Pulau Tioman, Malaysia

Overview

Basic Information

• IMG/M Taxon OID: 2019105005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045378 | Gp0051379 | Ga0011173
• Sample Name: Marine microbial communities from Pulau Tioman, Malaysia
• Sequencing Status: Permanent Draft
• Sequencing Center: Illumina
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2883652
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-H1	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Community From Pulau Tioman, Malaysia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Community From Pulau Tioman, Malaysia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pulau Tioman, Malaysia (South China Sea)
• Coordinates
  • Lat. (^o): 2.8
  • Long. (^o): 104.2
  • Alt. (m): N/A
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002716	Metagenome / Metatranscriptome	535	Y
F008797	Metagenome	328	Y
F009440	Metagenome	318	Y
F011585	Metagenome	289	Y
F040177	Metagenome	162	Y
F040392	Metagenome	162	N
F071135	Metagenome	122	Y
F073420	Metagenome / Metatranscriptome	120	Y
F078588	Metagenome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
PelMarPul_NODE_1085_len_3404_cov_9_713279	All Organisms → Viruses	3430
PelMarPul_NODE_1390_len_554_cov_8_084838	Not Available	580
PelMarPul_NODE_1717_len_634_cov_25_911673	Not Available	660
PelMarPul_NODE_2007_len_634_cov_8_578864	Not Available	660
PelMarPul_NODE_33_len_31855_cov_16_988258	Not Available	31881
PelMarPul_NODE_5499_len_487_cov_7_815195	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-H1	513
PelMarPul_NODE_608_len_997_cov_54_885658	Not Available	1023
PelMarPul_NODE_8799_len_4261_cov_16_710161	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4287
PelMarPul_NODE_934_len_496_cov_77_213707	Not Available	522
PelMarPul_NODE_97_len_1329_cov_8_527464	Not Available	1355

Sequences

Scaffold ID	Protein ID	Family	Sequence
PelMarPul_NODE_1085_len_3404_cov_9_713279	MgKW_10470	F073420	MKSINFQLDQTRADKLSKISDATAGNMTNVSVAGEFIEFEQPKLSATKLAQALLNSAIDRAFSQLPQ
PelMarPul_NODE_1390_len_554_cov_8_084838	MgKW_01620	F011585	MNLKEKLQQLAQERQNLQVAMIEITGAMKILEQQILEAEPELVQPSNTEASTQESKTKSLKSKA
PelMarPul_NODE_1717_len_634_cov_25_911673	MgKW_04050	F071135	MMLRMSPLPRSLMTSLNSNKRPQRFRPEGYSPWTNAIVIAVFCALFGGAFWVSLTQTLDQQQRQHCEQGWQPACEKLK
PelMarPul_NODE_1717_len_634_cov_25_911673	MgKW_04070	F073420	VQINLDQLRSEKLKKLSEATKGNMTNVSIAGEFIEFEQPKLSSSKLALALLNSAIDKAYAQLPG
PelMarPul_NODE_2007_len_634_cov_8_578864	MgKW_42130	F078588	MSWLDNLRKRKREEPTNRLLFFSKQELTEQAYAVVRVTWYLQGKICGVSETSIGLYDQDVIAEFSGVVSSALGAGCDVSVACIDDPHYLGIYES
PelMarPul_NODE_33_len_31855_cov_16_988258	MgKW_12060	F002716	MSLYNLETEEDMEAYLDIDFGHGVSAVYTRSGTASTIKIIINEEYIETQDGIGVEQSQPIAYCRTIDAPNASFGDTLNVAAIKDVDGNTLKAAQNYKIVNAQKDRTGFSALLLEEA
PelMarPul_NODE_5499_len_487_cov_7_815195	MgKW_14590	F008797	KKRLKQDSWTYFEFFLACELGMTVSRLRNELTDAELIHFAAYHELKAEKEQKAMDRAKLQRR
PelMarPul_NODE_608_len_997_cov_54_885658	MgKW_34110	F040392	MTERQIRATIRTAHHYGGSFFSTLAAAALAADPRNRSRILDAFPEIIAKYGPGSSYYDES
PelMarPul_NODE_8799_len_4261_cov_16_710161	MgKW_18760	F009440	MKAKDYKSITELLEKKYKKKFYLFQDFEDIINRIKQRKDKQ
PelMarPul_NODE_8799_len_4261_cov_16_710161	MgKW_18790	F040177	MNNKKIEDFKKYVWSFYGEDQGLYRDFFDNNLKMEEVERAIEIRLSNMKLAFDGDSFDREIVRDIIFKMRDPKAQTEHEFKFKIERGV
PelMarPul_NODE_934_len_496_cov_77_213707	MgKW_20260	F078588	MNRLLFFSKQELTEQTYAVIRVTWYLKGKICGVSETAIGLYETDVIAEFSGLVGNALRAGCDVSVACIDDPHYLGIYEP
PelMarPul_NODE_97_len_1329_cov_8_527464	MgKW_36390	F073420	MKNVQIVLDQSRADKLDKISEATKGNMTNVSIAGEFIEFEQPKLSASKLAQALLNSAIDRAFSQLQ