Scaffold PelMarPul_NODE_2007_len_634_cov_8_578864

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PelMarPul_NODE_2007_len_634_cov_8_578864

Scaffold PelMarPul_NODE_2007_len_634_cov_8_578864

Overview

Basic Information
Taxon OID	2019105005 Open in IMG/M
Scaffold ID	PelMarPul_NODE_2007_len_634_cov_8_578864 Open in IMG/M
Source Dataset Name	Marine microbial communities from Pulau Tioman, Malaysia
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Illumina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	660
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Community From Pulau Tioman, Malaysia

Source Dataset Sampling Location
Location Name	Pulau Tioman, Malaysia (South China Sea)
Coordinates	Lat. (^o)	2.8	Long. (^o)	104.2	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078588	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
MgKW_42130	F078588	GGAGG	MSWLDNLRKRKREEPTNRLLFFSKQELTEQAYAVVRVTWYLQGKICGVSETSIGLYDQDVIAEFSGVVSSALGAGCDVSVACIDDPHYLGIYES

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