Scaffold YNP18_C1843

Overview

Basic Information

• Taxon OID: 2016842004
• Scaffold ID: YNP18_C1843
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13669
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (44.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7649458
  • Long. (^o): -110.4303679

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000750	Metagenome / Metatranscriptome	908	Y

Sequences

Protein ID	Family	RBS	Sequence
YNP18_264700	F000750	GGAG	MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIIAGGIPL