Sample 2016842004

Overview

Basic Information
IMG/M Taxon OID	2016842004 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045212 \| Gp0051405 \| Ga0026238
Sample Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	38709330
Sequencing Scaffolds	19
Novel Protein Genes	19
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	8
All Organisms → Viruses	5
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2
Not Available	3
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.7649458	Long. (^o)	-110.4303679	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000750	Metagenome / Metatranscriptome	908	Y
F013155	Metagenome / Metatranscriptome	274	Y
F075483	Metagenome / Metatranscriptome	119	Y
F102093	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F000750

Metagenome / Metatranscriptome

908

F013155

Metagenome / Metatranscriptome

274

F075483

Metagenome / Metatranscriptome

119

F102093

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
YNP18_C1843	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	13669	Open in IMG/M
YNP18_C3321	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	2073	Open in IMG/M
YNP18_C339	All Organisms → Viruses	1786	Open in IMG/M
YNP18_C340	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	2839	Open in IMG/M
YNP18_C365	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1563	Open in IMG/M
YNP18_C4039	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	5831	Open in IMG/M
YNP18_C418	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	2483	Open in IMG/M
YNP18_C442	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	3168	Open in IMG/M
YNP18_C4537	All Organisms → Viruses	1490	Open in IMG/M
YNP18_C625	All Organisms → Viruses	1481	Open in IMG/M
YNP18_C6360	All Organisms → Viruses	1906	Open in IMG/M
YNP18_C7349	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	3394	Open in IMG/M
YNP18_C842	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	3444	Open in IMG/M
YNP18_C9904	All Organisms → Viruses	1483	Open in IMG/M
YNP18_FZTP12352_b1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	783	Open in IMG/M
YNP18_FZTP19403_g1	Not Available	837	Open in IMG/M
YNP18_FZTP20985_g1	Not Available	761	Open in IMG/M
YNP18_FZTP22350_g1	Not Available	752	Open in IMG/M
YNP18_FZTP34528_b1	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	824	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

YNP18_C1843

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

13669

Open in IMG/M

YNP18_C3321

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

2073

Open in IMG/M

YNP18_C339

All Organisms → Viruses

1786

Open in IMG/M

YNP18_C340

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

2839

Open in IMG/M

YNP18_C365

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.

1563

Open in IMG/M

YNP18_C4039

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

5831

Open in IMG/M

YNP18_C418

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

2483

Open in IMG/M

YNP18_C442

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

3168

Open in IMG/M

YNP18_C4537

All Organisms → Viruses

1490

Open in IMG/M

YNP18_C625

All Organisms → Viruses

1481

Open in IMG/M

YNP18_C6360

All Organisms → Viruses

1906

Open in IMG/M

YNP18_C7349

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

3394

Open in IMG/M

YNP18_C842

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

3444

Open in IMG/M

YNP18_C9904

All Organisms → Viruses

1483

783

Not Available

837

Open in IMG/M

YNP18_FZTP20985_g1

Not Available

761

Open in IMG/M

YNP18_FZTP22350_g1

Not Available

752

Open in IMG/M

YNP18_FZTP34528_b1

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

824

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
YNP18_C1843	YNP18_264700	F000750	MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIIAGGIPL
YNP18_C3321	YNP18_127390	F000750	MYLSVVITAFLFSYWFFKKRYKVKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_C339	YNP18_239100	F000750	MYLSVAITAFLFSYWFFKKRFRVKPLTLPINVETGDVIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDAVYKDIVTFTAGYFGTIVAGGIPL
YNP18_C340	YNP18_245820	F000750	MYLSVVITAFLFSYWFFRKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAIYKDIATFTAGYFGTIIAGGIPL
YNP18_C365	YNP18_402360	F075483	MIELLAVQAVTTAALAAVVILLRRQLYPMIATAGPTYASFWIRSVDVLVLRTPQFEAAKTVIRVRWLFSEEIHMTYSFRVYDVAMHPYRRHHYVRWKAWMQGDDRYKCEVEKPRGLSKLYNKAIDVFCKEKKEEKKDVVIVPTRRRRRKCDLQCYKRRYGHYPPPRYSPP
YNP18_C4039	YNP18_240000	F000750	MYLSVAITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIIAGGIPL
YNP18_C418	YNP18_107660	F000750	MYLSVVITAFLFSYWFFKKRFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_C442	YNP18_258580	F000750	MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_C4537	YNP18_227740	F000750	MYLSIAITAFLFSYWFFKKKFRAKPFKLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTINCRRHPAVKSLYLVQLQ
YNP18_C625	YNP18_151260	F000750	MYLSVVITAFLFSYWFFKKRYKVKPLQLPINVETGDIIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIIAGGIPL
YNP18_C6360	YNP18_373280	F000750	MYLSVAITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_C7349	YNP18_302120	F000750	MYLSVVITAFLFSYWFFRKRFRVKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIAAFTAGYFGTIVAGGIPP
YNP18_C842	YNP18_258680	F000750	MYLSVVITAFLFSYWFFKKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYVDVLVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIVAGGIPL
YNP18_C9904	YNP18_21440	F000750	MYLSVIITAFLFSYWFFKKRYKAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_FZTP12352_b1	YNP18_406710	F013155	MELYQAVVIAIALVNLAVTAWLLRLLLPVWQTLRKVVFALDNYDFDKLAKQFLSNEKPLAESVVVKTMEKKEEGYREISIIKTYKKPLDAKEIQRTS
YNP18_FZTP19403_g1	YNP18_167110	F000750	YWLYKKVRNPKPLQFPINVQTGDVIHSAFGSLLANLSMQGHMFDVAVGVILYLAYQITEWIMKKDEIYKDIATFTAGYFITLTAKYIPV
YNP18_FZTP20985_g1	YNP18_85300	F000750	MYLSVVVTAFLFSYWFFRKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_FZTP22350_g1	YNP18_101180	F000750	MIASIVITAVLFSYWLYKKVRNPKPFQFPINVQTGDVIHSAFGSLLANLSMQGHMFDVAVGVILYLAYQITEWITKKDEIYKDIATFTAGYFITLTAKYIPV
YNP18_FZTP34528_b1	YNP18_381320	F102093	MPARSAHKIIRHGTSNVVVIPKPYRDYHKLEPGTEVTVLYDSLLLIVPKNLESILEEKADLIEQLLGQKRSEKHNG

Scaffold ID

Protein ID

Family

Sequence

YNP18_C1843

YNP18_264700

F000750

MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIIAGGIPL

YNP18_C3321

YNP18_127390

F000750

MYLSVVITAFLFSYWFFKKRYKVKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL

YNP18_C339

YNP18_239100

F000750

MYLSVAITAFLFSYWFFKKRFRVKPLTLPINVETGDVIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDAVYKDIVTFTAGYFGTIVAGGIPL

YNP18_C340

YNP18_245820

F000750

MYLSVVITAFLFSYWFFRKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAIYKDIATFTAGYFGTIIAGGIPL

YNP18_C365

YNP18_402360

F075483

MIELLAVQAVTTAALAAVVILLRRQLYPMIATAGPTYASFWIRSVDVLVLRTPQFEAAKTVIRVRWLFSEEIHMTYSFRVYDVAMHPYRRHHYVRWKAWMQGDDRYKCEVEKPRGLSKLYNKAIDVFCKEKKEEKKDVVIVPTRRRRRKCDLQCYKRRYGHYPPPRYSPP

YNP18_C4039

YNP18_240000

F000750

MYLSVAITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIIAGGIPL

YNP18_C418

YNP18_107660

F000750

MYLSVVITAFLFSYWFFKKRFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL

YNP18_C442

YNP18_258580

F000750

MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL

YNP18_C4537

YNP18_227740

F000750

MYLSIAITAFLFSYWFFKKKFRAKPFKLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTINCRRHPAVKSLYLVQLQ

YNP18_C625

YNP18_151260

F000750

MYLSVVITAFLFSYWFFKKRYKVKPLQLPINVETGDIIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIIAGGIPL

YNP18_C6360

YNP18_373280

F000750

MYLSVAITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL

YNP18_C7349

YNP18_302120

F000750

MYLSVVITAFLFSYWFFRKRFRVKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIAAFTAGYFGTIVAGGIPP

YNP18_C842

YNP18_258680

F000750

MYLSVVITAFLFSYWFFKKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYVDVLVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIVAGGIPL

YNP18_C9904

YNP18_21440

F000750

MYLSVIITAFLFSYWFFKKRYKAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL

YNP18_FZTP12352_b1

YNP18_406710

F013155

MELYQAVVIAIALVNLAVTAWLLRLLLPVWQTLRKVVFALDNYDFDKLAKQFLSNEKPLAESVVVKTMEKKEEGYREISIIKTYKKPLDAKEIQRTS

YNP18_FZTP19403_g1

YNP18_167110

F000750

YWLYKKVRNPKPLQFPINVQTGDVIHSAFGSLLANLSMQGHMFDVAVGVILYLAYQITEWIMKKDEIYKDIATFTAGYFITLTAKYIPV

YNP18_FZTP20985_g1

YNP18_85300

F000750

MYLSVVVTAFLFSYWFFRKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL

YNP18_FZTP22350_g1

YNP18_101180

F000750

MIASIVITAVLFSYWLYKKVRNPKPFQFPINVQTGDVIHSAFGSLLANLSMQGHMFDVAVGVILYLAYQITEWITKKDEIYKDIATFTAGYFITLTAKYIPV

YNP18_FZTP34528_b1

YNP18_381320

F102093

MPARSAHKIIRHGTSNVVVIPKPYRDYHKLEPGTEVTVLYDSLLLIVPKNLESILEEKADLIEQLLGQKRSEKHNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2016842004: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences