Scaffold YNP3A_C3599

Overview

Basic Information

• Taxon OID: 2016842001
• Scaffold ID: YNP3A_C3599
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5508
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7242925
  • Long. (^o): -110.7056131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
YNP3A_232640	F075084	N/A	VDYAKLMDFTSQNPAGKLFRRAGVAMVYARRLSASWYGYDTGVLLKRSLRRILRWSINYCRVMRELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRVIRMIANYNSETVSKLLTKMTEECSTYEVRG