2016842001: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin

Overview

Basic Information

• IMG/M Taxon OID: 2016842001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051342 | Ga0026233
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16091989
• Sequencing Scaffolds: 14
• Novel Protein Genes: 21
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.	2
Not Available	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	1
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus	1
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7242925
  • Long. (^o): -110.7056131
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039967	Metagenome	162	N
F051271	Metagenome / Metatranscriptome	144	Y
F051761	Metagenome	143	N
F052705	Metagenome	142	N
F057170	Metagenome / Metatranscriptome	136	N
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F072877	Metagenome / Metatranscriptome	121	N
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F080245	Metagenome	115	N
F082927	Metagenome / Metatranscriptome	113	N
F085905	Metagenome	111	N
F087445	Metagenome / Metatranscriptome	110	Y
F090002	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
YNP3A_C1657	All Organisms → Viruses → Predicted Viral	2055
YNP3A_C2021	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.	8071
YNP3A_C225	Not Available	4737
YNP3A_C2267	Not Available	2109
YNP3A_C2492	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	9978
YNP3A_C2667	All Organisms → Viruses → Predicted Viral	3766
YNP3A_C3399	Not Available	1921
YNP3A_C3483	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.	5193
YNP3A_C3599	All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	5508
YNP3A_C4632	All Organisms → Viruses → Predicted Viral	1640
YNP3A_C5087	All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus	8075
YNP3A_C5188	All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae	6298
YNP3A_C739	Not Available	6200
YNP3A_GFAO12379_c1_1000_100_2	Not Available	566

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP3A_C1354	YNP3A_127340	F051761	LIERFKASQDGFEFKIQFSPHLELPFEEFEELTKGFDSVNFIEMGKVTFADLISVIAERQVGPSRCRRDQKRVTITFRFSDDKKTLLVDYVHGRRETVPGKCS
YNP3A_C1657	YNP3A_134190	F072877	VIWVYIGSTIVWLLSLIFAVVTSLKENGTLIGNLLIFIITTTMWATVMFNVGYPCWPPVAFALLIMVFAIELLLDLVMMAG
YNP3A_C2021	YNP3A_49320	F090002	VKLKADCASDAGGNVITVHKDCRLCRVSLAFNMPAGWYAMLVDWEA
YNP3A_C225	YNP3A_57800	F063848	VAKKRRSVHDPTLSVIHYQEQLEKMSKAYEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSTSLKAPVIAQLAVEFIGIGMAFLKASNEGLNSYALSGRLAQIATLRATHIVHATTLSCAQVGEIINGMLKKLSGVTADPLTFTENDGVCEAKVANPLTKLSVASASTGYTVALTDILKAKTPEEVLMAK
YNP3A_C225	YNP3A_57810	F085905	MEEQLSFPSSRLSQFDYVTMNAYWLNTRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHLKK
YNP3A_C225	YNP3A_57830	F061983	LKKYVFKVKVVQIKLVNDEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYGDVIDVEKLKDVGAIVVKENDSEPVRTMKTLVARWYNKKLVEEEKAFETCTKFIM
YNP3A_C225	YNP3A_57850	F076263	MLSAEDLSAILDDLEDICARIPDSVTFHPTLEIRRHHANEEAMYIKFDCRDHKYTLTIVRNGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
YNP3A_C225	YNP3A_57880	F080245	MIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
YNP3A_C2267	YNP3A_157730	F052705	MIATGVALTVAGIAGGLAGMHLMLILIPIGLAATVLGLLDYTWFXRGGEPSPFTLLAILLGEAAATLAIIIIEGWV
YNP3A_C2492	YNP3A_215470	F082927	MSGQEEKQEQRKSFFEENGRLLVELGDFLTTLQVWTRVDHILSNDQQLALAYALGVIDGIGSALAALDNSNKALKFLYNRKNVKEFSELVDAVERYHYMLVRGEVEDPEGYLWEFDLLVGSFREFMAKAIKSIKTQSPFDR
YNP3A_C2667	YNP3A_157850	F039967	MMASIGVGVGFVAPYGAIEKVTVPEGLKLSQDIMASAVTVLLGLTVFGTSVRNMLQPPYGDTWTWLNTSTSVYMALEAFIAIRDKTD
YNP3A_C3399	YNP3A_232490	F039967	MASIGIGVGLVAPYGAIEKVTVPEGLKLSQDIMASAVTILLGLTVFGTSVRNMLQPPYGGTWTWLNTSTSVYMALGAFIAIG
YNP3A_C3483	YNP3A_195830	F039967	MMASIGVGVGFVAPYGAIEKVTVPEGLKLSQDIMASAVTVLLGLTVFGTSVRNMLQPPYGGTWTWLNTSTSVYMALGAFIAIRDKAD
YNP3A_C3599	YNP3A_232640	F075084	VDYAKLMDFTSQNPAGKLFRRAGVAMVYARRLSASWYGYDTGVLLKRSLRRILRWSINYCRVMRELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRVIRMIANYNSETVSKLLTKMTEECSTYEVRG
YNP3A_C4632	YNP3A_76940	F051271	VKCPKERTLAICSEGREVELFDYLAQLIVERIEDGTLRKADAIRLMERLERLYYALHEYATSEEDWLF
YNP3A_C5087	YNP3A_204520	F077499	MMGDIFVFPNESLKPVSYPNITNAEIIFILTISIPIGGHPESDTPMEEKMKFLSTYTPLEFQKLYYIKTIDKALDILKHLLYTREDNVLFEIANKINSLYDVKELINKVKDVECTKDLKTLNVTLTEAKRYIYPDISLSRYASSQAKQLGIKKYEYYARLFQCYVETDKNLDMLTLFRVSNLVFNFLRINNLSHIIKKMQFKDENINKIAEKKNKG
YNP3A_C5087	YNP3A_204540	F077502	VVTMTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKEQVDAYF
YNP3A_C5087	YNP3A_204550	F070317	MSAMEELKELNLERIVKDAQEGEVCVVNKILKGKLTDLMPLIKDPATLSQKAMEFIQSRGEDIFYLFQCTTRQGRNIKLLVRQSFDPRSTFYKLMKKYKTIKVGDEVNVFYNPEKRRYDFLL
YNP3A_C5188	YNP3A_206790	F087445	MSTASSKPTDELVQRLLNMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNAPRVKEVVENARRNRKPMDRFADMIMDMVETMLKSKAMSLTDEDREKLREKVKEMIKDEE
YNP3A_C739	YNP3A_91540	F057170	LGLAAREVKEMTTRGIIEVFNSQNELLSRIYVHGDMYPKNGAMCEVINFLNKRYLVNGIPPDGFFDVMNGMDNLAALVTAHLIRWYTKIIRRFYGVKKNDLAAGYVYLYPFNLDIKDTDAEYIYELRPMKDEEKLVYPGGARKVLDVVRVTAKRYEWWNGTGPTDFFDGPLRDFAKQYCK
YNP3A_GFAO12379_c1_1000_100_2	YNP3A_168770	F075084	VRPCRKDLCLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIANYNSENVSKVLTKMTEMCSTYEV