Scaffold YNP3A

Basic Information
Taxon OID	2016842001 Open in IMG/M
Scaffold ID	YNP3A_C225 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

2016842001 Open in IMG/M

Scaffold ID

Source Dataset Name

Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4737
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4737

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.7242925	Long. (^o)	-110.7056131	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, WY

Coordinates

Lat. (^o)

44.7242925

Long. (^o)

-110.7056131

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F085905	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
YNP3A_57800	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMSKAYEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSTSLKAPVIAQLAVEFIGIGMAFLKASNEGLNSYALSGRLAQIATLRATHIVHATTLSCAQVGEIINGMLKKLSGVTADPLTFTENDGVCEAKVANPLTKLSVASASTGYTVALTDILKAKTPEEVLMAK
YNP3A_57810	F085905	N/A	MEEQLSFPSSRLSQFDYVTMNAYWLNTRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHLKK
YNP3A_57830	F061983	AGGAGG	LKKYVFKVKVVQIKLVNDEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYGDVIDVEKLKDVGAIVVKENDSEPVRTMKTLVARWYNKKLVEEEKAFETCTKFIM
YNP3A_57850	F076263	GGA	MLSAEDLSAILDDLEDICARIPDSVTFHPTLEIRRHHANEEAMYIKFDCRDHKYTLTIVRNGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
YNP3A_57880	F080245	N/A	MIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold YNP3A_C225

Overview

Ecosystem & Geography

Associated Families

Sequences