Scaffold 2014660890

Overview

Basic Information

• Taxon OID: 2014642001
• Scaffold ID: 2014660890
• Source Dataset Name: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 4_Below_base_of_euphotic_200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1061
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location

• Location Name: Hawaii Ocean Time Series, North Pacific Ocean
• Coordinates
  • Lat. (^o): 22.45
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040678	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
2014668813	F040678	AGGA	MDAIKGVVNKLDLSVPIEQVNYLAGHKSMAMTKRYDHANEERYGAAIEALDEAGKTSSAEALAAARWKRN