2014642001: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 4_Below_base_of_euphotic_200m

Overview

Basic Information

• IMG/M Taxon OID: 2014642001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056617 | Gp0051071 | Ga0011160
• Sample Name: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 4_Below_base_of_euphotic_200m
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7829659
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183	1
All Organisms → Viruses	2
Not Available	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine photic zone → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Hawaii Ocean Time Series, North Pacific Ocean
• Coordinates
  • Lat. (^o): 22.45
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F022779	Metagenome	213	Y
F039179	Metagenome	164	N
F040678	Metagenome / Metatranscriptome	161	Y
F044551	Metagenome / Metatranscriptome	154	Y
F049703	Metagenome	146	Y
F090507	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2014654228	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183	813
2014655491	All Organisms → Viruses	961
2014655626	Not Available	967
2014656187	All Organisms → Viruses	993
2014657610	All Organisms → Viruses → Predicted Viral	1024
2014658184	Not Available	901
2014660890	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	1061

Sequences

Scaffold ID	Protein ID	Family	Sequence
2014654228	2014659798	F022779	MAGKRKTTAKKKAVPVRKTKLSEDEKELRQQRLDALRNAPIQMPKSVYAARTQQADKLGTGEITGRPTDYVPKRIEDFLKNVRSGLPVMRAGAMVGIAKSTLYRWAEQYSDFKEAIDQAESEYQAFALGTVNDGIANGDGHLAMKLLGARFGDEYATSKKVDVRSTHVRSMISPDRLAGLQSARVETDVVSAANALGMEEPDALPEKVTQTPPENDDSAENEVGGTPTPGCKSP
2014655491	2014661316	F010473	MTLSRYEIKVGFFKGLLLGIRHYPFYDDKVFEEDIVIYFGIFQIIITRIYEY
2014655626	2014661529	F044551	IFIGLVFLSLIRTSLKIDRNERNIRLQEELCQVDKAYCK
2014656187	2014662352	F049703	MSQLSPLPASKGSLLAVSGKVREEGGFTGWVLSMFPEINSVVGITTNEDRNDRKAFRPEELTII
2014657610	2014664492	F039179	MKSLLIKIGIGISLGVNLFVFTVAMYGLYTREARVEENRKWLTEQIRQEVHQSVILMMPPTTGKVNVGDK
2014658184	2014665108	F090507	MLNLKSFIVDDELIIDKPNWYKLKNEYSQQELKDAISDTIEGLPLPLFPITEKEAKEEFEELVKFDARTLLTKDNLYSKADYKYELSHWYLKNSVVGRKSSNYFHQLARWRVQHAXHXSPXQKKNY
2014659269	2014666459	F022779	MAGKRKTTAKKKAVPIVKTEIDEETKASRLEALRNAPIAMPKSVLTARADQESKLGSGVKCGRRTGYTPDRIEALLKNIRSGLPIMRACALAAIPTSKIYDWTKRYSDLSDAIRQAESEYQAFALGTVNEGIANGDGHLAMKLLGARFSDEYATSKKVDVRSMHVRSSISADQLAKLPSARLGSDVVSAAXALXSXXXAH
2014660890	2014668813	F040678	MDAIKGVVNKLDLSVPIEQVNYLAGHKSMAMTKRYDHANEERYGAAIEALDEAGKTSSAEALAAARWKRN