Scaffold 2014616526

Overview

Basic Information

• Taxon OID: 2014613002
• Scaffold ID: 2014616526
• Source Dataset Name: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 1_Upper_euphotic_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1031
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location

• Location Name: North Pacific Ocean at depths of 10m to 4000m at the Hawaii open-ocean time-series station
• Coordinates
  • Lat. (^o): 22.45
  • Long. (^o): -158.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025142	Metagenome	203	Y
F097509	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
2014622547	F025142	N/A	SGPGDHTLQLQITDSTGTAKNLSNDVTYATGKWKVWKPDGTSLINGSITFDTRSTGDISYTLSATDATNAKAGRWEGEVELLDSNGDISEQTESFTFIIDESY
2014622548	F097509	N/A	MLKLEDINNEVYFKFRKAQVEAMETERLGKIHVSDVIKPCDRYTIYGKISPKTMSTEDMKSLYIGQAVHNNSKLATDENHEKFLAWDWVEDKPLTYEEAKKIPEGDPKHLDIIYGSIDDLLKVGDKWIITDKKTTGSIGYFSKASSKPSDSHKDQINRYRVLLHKCYGINADFGCVIYISNSISKRVRDKPACLSFKLHLYEEIVEGYEPKSRIIKDALLDKTFPK