2014613002: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 1_Upper_euphotic_10m

Overview

Basic Information

• IMG/M Taxon OID: 2014613002
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056617 | Gp0051026 | Ga0011123
• Sample Name: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 1_Upper_euphotic_10m
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7482595
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean at depths of 10m to 4000m at the Hawaii open-ocean time-series station
• Coordinates
  • Lat. (^o): 22.45
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007891	Metagenome / Metatranscriptome	343	Y
F009965	Metagenome	310	Y
F025142	Metagenome	203	Y
F068722	Metagenome / Metatranscriptome	124	N
F097509	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2014615646	Not Available	983
2014616526	Not Available	1031
2014617782	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	995
2014619776	Not Available	964

Sequences

Scaffold ID	Protein ID	Family	Sequence
2014615646	2014621281	F007891	MTLYSNFFSSAINSVEINEKVVKITYSSNLDKVYEYKCENIPEFSNSLCSVLTSNELLQDGGSVGKFIHKSRREKVLVDI
2014616526	2014622547	F025142	SGPGDHTLQLQITDSTGTAKNLSNDVTYATGKWKVWKPDGTSLINGSITFDTRSTGDISYTLSATDATNAKAGRWEGEVELLDSNGDISEQTESFTFIIDESY
2014616526	2014622548	F097509	MLKLEDINNEVYFKFRKAQVEAMETERLGKIHVSDVIKPCDRYTIYGKISPKTMSTEDMKSLYIGQAVHNNSKLATDENHEKFLAWDWVEDKPLTYEEAKKIPEGDPKHLDIIYGSIDDLLKVGDKWIITDKKTTGSIGYFSKASSKPSDSHKDQINRYRVLLHKCYGINADFGCVIYISNSISKRVRDKPACLSFKLHLYEEIVEGYEPKSRIIKDALLDKTFPK
2014617782	2014624343	F009965	MSTLKVNKLQHLNSTGDGLVVDNKGTVGIATNDLELNTTLVGAASSLVGLYIGDGSLIFSNNLSRSGGYYITTGVNALNAGPVSLNTVMTLDGTWVIV
2014619776	2014627470	F068722	MKIEFDYKQGEWIQLKSYLFPYLKKSELVQDFVKKVNTKTKLRTIK