Scaffold YNP4_C2592

Overview

Basic Information

• Taxon OID: 2013843003
• Scaffold ID: YNP4_C2592
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2089
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.733519
  • Long. (^o): -110.333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062912	Metagenome / Metatranscriptome	130	Y
F077497	Metagenome / Metatranscriptome	117	Y
F087443	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
YNP4_87490	F062912	N/A	MEILEKTYNLFLISEIIESESDLDKELERLLVDRDYNTMAKTLLYVLIYTLNNDTTYKNIRNIYINEAIDLLYMIDRIEFDDERIMKKFIQLIYRFISYSLEYKIKFITDHEKRELVKAKLHELVNII
YNP4_87510	F087443	N/A	MGQKEGPKKNYWMVFNETDNIDYIEKEIAKTSIDLNMDILEMRAWIFKAFVYDPEVKAKVIEFIKKNGSRTNQ
YNP4_87520	F077497	N/A	MDQEQINKIERIIEKYLFETMNNTDYELRKMDVIIKYLIYQKLKDIDETLKSIDENLFISANSDIYEK