2013843003: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs

Overview

Basic Information

• IMG/M Taxon OID: 2013843003
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051338 | Ga0026353
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17963232
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	3
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	2
All Organisms → Viruses → Predicted Viral	1
Not Available	3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.733519
  • Long. (^o): -110.333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000750	Metagenome / Metatranscriptome	908	Y
F013155	Metagenome / Metatranscriptome	274	Y
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N
F062912	Metagenome / Metatranscriptome	130	Y
F076261	Metagenome	118	Y
F077497	Metagenome / Metatranscriptome	117	Y
F080679	Metagenome	115	Y
F085903	Metagenome	111	Y
F087443	Metagenome / Metatranscriptome	110	Y
F090626	Metagenome / Metatranscriptome	108	Y
F099548	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNP4_C1635	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1531
YNP4_C2592	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	2089
YNP4_C4166	All Organisms → Viruses → Predicted Viral	1145
YNP4_FUBH14649_g1	Not Available	854
YNP4_FUBH16183_b1	Not Available	763
YNP4_FUBH19735_b1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	820
YNP4_FUBH20108_b1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta	767
YNP4_FUBH26090_g1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	854
YNP4_FUBH28079_b1	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	779
YNP4_FUBH481_g1	Not Available	877
YNP4_FUBH9125_b1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	781

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP4_C1635	YNP4_56070	F051572	MGRGPFADVRTFADVVLEGGCKKSLQFLKARLDLCVLAALVKAVPAGSMVKLRPGLVWRLAEELAAAAGRDRERVRNALLKRAGEVMARLRRELGDKAPAEALLARLAELFLEELEA
YNP4_C1635	YNP4_56080	F038745	MDRAAVACGELMQVSLALSAYYPLCSGGPPCAFAESVERLVRRAASARGAEELVEVMGGRIRLEGLGLPAPALEALAEGLGPEPRWLDALAASFFRLYLGLHKRRRVDGRDLALALCLWAQKRRREDPGNPLWRAAELEPDRLYTEEEAREALGVEEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV
YNP4_C2592	YNP4_87490	F062912	MEILEKTYNLFLISEIIESESDLDKELERLLVDRDYNTMAKTLLYVLIYTLNNDTTYKNIRNIYINEAIDLLYMIDRIEFDDERIMKKFIQLIYRFISYSLEYKIKFITDHEKRELVKAKLHELVNII
YNP4_C2592	YNP4_87510	F087443	MGQKEGPKKNYWMVFNETDNIDYIEKEIAKTSIDLNMDILEMRAWIFKAFVYDPEVKAKVIEFIKKNGSRTNQ
YNP4_C2592	YNP4_87520	F077497	MDQEQINKIERIIEKYLFETMNNTDYELRKMDVIIKYLIYQKLKDIDETLKSIDENLFISANSDIYEK
YNP4_C4166	YNP4_134950	F080679	MDEDAISRLLSKKSLRIIRYLYNNDYATLRTLEKALRMNGVTAREYIDLLSKYGIVKVSRVGRAYVIMLNREGKYTKAIIEFLKQVGYL
YNP4_FUBH14649_g1	YNP4_220200	F000750	MIASIIITIVLFSYWLYRKIRNPRPLQLPINVQTGDVIHSAFGSLLANLSMQGHLFDVAVGVILYLAYQIFEWTVKKDAIYKDIATFTAGYFITLTAKYIPL
YNP4_FUBH16183_b1	YNP4_200560	F080679	MMDEDAISKILSRKGLRIIRYLYNNGYATLRMLEKALRINGVTAREYMELLSKYGIVKVSKVGRAYVITLNREGKYTKAIIKFLKQWVTYEHRWVTKCG
YNP4_FUBH19735_b1	YNP4_222640	F013155	MEPYQAAVIAIALANLAVTVWLLRLLIPVWQTLRRVVFALDQYDFDKLAERFLSNEKPLAETIDVKVSEKREEGYRELTVTRVYKKPLDAKDVWKGRREADGPEMQ
YNP4_FUBH20108_b1	YNP4_205230	F076261	MIGGVAFQAGSGTGIVGSAVAYFAPVFDAIMAFLGIAFWASLIFLVYYGIEAYIHPTPFGRSARLASMYDHAKGIIWSIITIYLVLAVIAFAVNQASAAAGVGTSVSVGKLFYYVFVEPVVKGFSVLFSSV
YNP4_FUBH26090_g1	YNP4_261430	F013155	MELYQMAVIAIALANLAVTVWLLRLLIPIWQTLRKVVFALDNFDFDEISKKFLSNEKPLAEAVDIKVSEKKEEGYRELTVTRVYKKPLDPREIHENFVRQMAEKLQ
YNP4_FUBH28079_b1	YNP4_252850	F090626	MPRIFKFENIYFGRNSLVKLFANKIHLENYVDYDSTVLAYLLDVSDFTNTNALLSHFAIINGNEIRPILVEWNLRTIYGRLGILLKGVPGPRNTRILLKKFEQIIENNGRPEVVKYTAGQYAKVLANSKGLYQIYNFLVQRIYTLKSIGIKKSLEEVRRLAAIYR
YNP4_FUBH481_g1	YNP4_192260	F085903	VVSVNSLLKALLTAVVVVLVVADSLYETSIGMKTSDYALYLRTHPPAFALFIALYALVGVFFYVIVRWWP
YNP4_FUBH9125_b1	YNP4_240130	F099548	MIGLKRVVARVIVILVKGAPGDCISITPNLLGNMIDSGLVGEALRLLHALYIQGILDRSHGAYTLCSTDNPQLWAMVKRLPIDEAVAWLMWLIEDASDGKPIDTGPSFEL