Scaffold PLMO_C3844

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PLMO_C3844

Scaffold PLMO_C3844

Overview

Basic Information
Taxon OID	2013843001 Open in IMG/M
Scaffold ID	PLMO_C3844 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Morges-2007 (PGA)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1372
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater Plasmid Pools → Activated Sludge Microbial Communities From Commune De Morges, Switzerland

Source Dataset Sampling Location
Location Name	Bief, Commune de Morges, Canton Vaud, Switzerland
Coordinates	Lat. (^o)	46.51668	Long. (^o)	6.510145	Alt. (m)		Depth (m)	.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095356	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
PLMO_107150	F095356	GGAG	MLTSPQAKVLLNHNPDLIPIILGFQNHFEIAIDGESIAPQRMTAPPQARQFKTLTAAYSYLRTFLDYRGDVFIRLIDPTTGTGDA

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