NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold bisonPool14jan08_BXAW22735_y2

Scaffold bisonPool14jan08_BXAW22735_y2


Overview

Basic Information
Taxon OID2009439000 Open in IMG/M
Scaffold IDbisonPool14jan08_BXAW22735_y2 Open in IMG/M
Source Dataset Name2_050719S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)937
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients

Source Dataset Sampling Location
Location NameBison Pool / Rosette Geyser, Yellowstone National Park
CoordinatesLat. (o)44.5696298Long. (o)-110.8651817Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086364Metagenome111N

Sequences

Protein IDFamilyRBSSequence
BISONS_43820F086364AGGAGGMEREKIIAALETAFAEISGAEYEDEPITFAEFLESFAKFRDPDFPVYWIPWTIEEAVEELTGRKFGWHEDALKDEWNYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQAVEYFLRLVQQA

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