NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2008193692

Scaffold 2008193692


Overview

Basic Information
Taxon OID2008193000 Open in IMG/M
Scaffold ID2008193692 Open in IMG/M
Source Dataset NameMarine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1323
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Source Dataset Sampling Location
Location NamePalmer Station B, Arthur Harbor, Antarctic Peninsula
CoordinatesLat. (o)-64.766667Long. (o)-64.05Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033599Metagenome / Metatranscriptome177Y
F050679Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
2008194240F033599GAGMKKFDDKKKGYTAIVYIMESTKSVIVHFDGFKDIKECDNFSFQVMDDLGIEPLLTSPGVTLH
2008194241F050679N/AMANKTKKNPKVIAEIIEELAIGLSIRSCLSPKNKNPDRPCWQSFRTWMAKDQELRSQYEIAKTDGIEYLLSDATDLINQSLEDSKYKEKTDLGQTHLIKSFIDLTKWKSERLAPKTYMKKDQLQVFGSDSSPLIVKWDK

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