NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2008193000

2008193000: Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer



Overview

Basic Information
IMG/M Taxon OID2008193000 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0056601 | Gp0051056 | Ga0052227
Sample NameMarine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size10579509
Sequencing Scaffolds165
Novel Protein Genes174
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available158
All Organisms → Viruses2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine neritic zoneplanktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPalmer Station B, Arthur Harbor, Antarctic Peninsula
CoordinatesLat. (o)-64.766667Long. (o)-64.05Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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