Scaffold 2007310383

Overview

Basic Information

• Taxon OID: 2007309000
• Scaffold ID: 2007310383
• Source Dataset Name: Hot spring microbial communities from Yellowstone Bath Hot Springs, Wyoming, USA - Filamentous sample
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2159
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.560318
  • Long. (^o): -110.8338344

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
2007312986	F038745	N/A	MDKAVVVVCGELMQISLAFSAYYPLCLGGPPCDFAEAVERLIRRAASARGAEELVEALGGRVRLEELGLPDPALEVLAEELGSEPRWLDALAASFFRLYLGLGRRRRVDGRDLALALCLWAQKKRREDPRNPLWRAAELKPDKLYTDEEAREALEMEERLFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV
2007312987	F051572	AGTAGG	VHGGPFAEVWTFADVVLEGGCKKSPQFLNTRLELCVLAALIKTAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGEVLAQLRRELGDKTPAEALLAKLAELFLKELA