2007309000: Hot spring microbial communities from Yellowstone Bath Hot Springs, Wyoming, USA - Filamentous sample

Overview

Basic Information

• IMG/M Taxon OID: 2007309000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051059 | Ga0027797
• Sample Name: Hot spring microbial communities from Yellowstone Bath Hot Springs, Wyoming, USA - Filamentous sample
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10490501
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.560318
  • Long. (^o): -110.8338344
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N
F075483	Metagenome / Metatranscriptome	119	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
2007309369	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1033
2007310383	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	2159
2007312189	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	2467
2007315643	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	746

Sequences

Scaffold ID	Protein ID	Family	Sequence
2007309369	2007310093	F013155	VTVWLLRLLFTVWRTFQKIVFTLDDFDFERLARQYLNGETPLSESVNVRVSENKEEGYKEITVTKTYRKPLDAKEAWEGIVKQMAQELQ
2007309616	2007310702	F075483	MFTVVKSGEVGFWVRTVDVLGVVMPQFEVSKVVIKVRWLFSEELHLTHSLRIYDVAMDSSSRYFYKEWRAWLNGDDRYRCEVEKPRGLARIYTKAIDVYCRKVKKDEKKEVVILPSRWRKRRYKRWTKPEPGGSAPS
2007310383	2007312986	F038745	MDKAVVVVCGELMQISLAFSAYYPLCLGGPPCDFAEAVERLIRRAASARGAEELVEALGGRVRLEELGLPDPALEVLAEELGSEPRWLDALAASFFRLYLGLGRRRRVDGRDLALALCLWAQKKRREDPRNPLWRAAELKPDKLYTDEEAREALEMEERLFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV
2007310383	2007312987	F051572	VHGGPFAEVWTFADVVLEGGCKKSPQFLNTRLELCVLAALIKTAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGEVLAQLRRELGDKTPAEALLAKLAELFLKELA
2007312189	2007318229	F038745	MDKAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVERLIRRAASARGAEELLEALGGRVRLEELGLPDPALEVLAEELGPEPPWLDALAASFFRLYLGLGRRRRIDGRDLALALCLWAQKKRREDPRNPLWRAAELKPDRLYTEEEARKALNIEERLFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV
2007315643	2007322841	F013155	MEFYQVAVIAIALANLAVTVWLLRLLLPVWQTLRKVVFAMDSYDFDRLAKQFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYKKPLDAKEVWEGIVRQMAEKLQ