Scaffold 2004274217

Overview

Basic Information

• Taxon OID: 2004247002
• Scaffold ID: 2004274217
• Source Dataset Name: Hypersaline mat microbial communities from Guerrero Negro, Mexico - 2-3 mm depth into microbial mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 784
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Salt Crystallizer Ponds → Microbial Mats → Hypersaline Mat → Hypersaline Mat Microbial Communities From Guerrero Negro, Baja California Sur, Mexico

Source Dataset Sampling Location

• Location Name: Guerrero Negro, Baja California Sur, Mexico
• Coordinates
  • Lat. (^o): 27.68908
  • Long. (^o): -113.917
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003188	Metagenome / Metatranscriptome	502	Y

Sequences

Protein ID	Family	RBS	Sequence
2004276462	F003188	N/A	MIDPKKKLRETLFSIHKLSYRIKVTEPPKDLMEKKLFIEIMETLRKIEDRRDFMQEEIGMDMTLYEDEFFLVIENLLKLHFSKEQLALIQLYLYQLTPDKDWDGTITIERDKKEQVVEFKTPADVWKIISAL