Metagenome Family F098876

Basic Information
Family ID	F098876
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	103 residues
Representative Sequence	SKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Number of Associated Samples	100
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.09 %
% of genes from short scaffolds (< 2000 bps)	88.35 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Archaea (95.146 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment (8.738 % of family members)
Environment Ontology (ENVO)	Unclassified (27.184 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.485 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.80% β-sheet: 26.73% Coil/Unstructured: 53.47%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00149	Metallophos	10.68
PF01938	TRAM	0.97
PF00072	Response_reg	0.97
PF00092	VWA	0.97
PF01436	NHL	0.97
PF01477	PLAT	0.97
PF13365	Trypsin_2	0.97
PF05977	MFS_3	0.97
PF00702	Hydrolase	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.09 %
Viruses	superkingdom	All Organisms → Viruses	2.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	95.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000045\|ARCol0oldRDRAFT_c01456	All Organisms → cellular organisms → Archaea	1526	Open in IMG/M
3300000550\|F24TB_12821477	All Organisms → cellular organisms → Archaea	1007	Open in IMG/M
3300000652\|ARCol0yngRDRAFT_1000180	All Organisms → cellular organisms → Archaea	10714	Open in IMG/M
3300000890\|JGI11643J12802_10721279	All Organisms → cellular organisms → Archaea	893	Open in IMG/M
3300003371\|JGI26145J50221_1000481	All Organisms → cellular organisms → Archaea	3437	Open in IMG/M
3300003379\|JGI26142J50222_103045	All Organisms → cellular organisms → Archaea	502	Open in IMG/M
3300003380\|JGI26144J50225_103058	All Organisms → cellular organisms → Archaea	503	Open in IMG/M
3300003397\|JGI26133J50247_102439	All Organisms → cellular organisms → Archaea	619	Open in IMG/M
3300003398\|JGI26130J50248_100340	All Organisms → cellular organisms → Archaea	1991	Open in IMG/M
3300003503\|JGI26141J51220_1014410	All Organisms → cellular organisms → Archaea	535	Open in IMG/M
3300003993\|Ga0055468_10174757	All Organisms → cellular organisms → Archaea	650	Open in IMG/M
3300003996\|Ga0055467_10161542	All Organisms → cellular organisms → Archaea	675	Open in IMG/M
3300005168\|Ga0066809_10105122	All Organisms → cellular organisms → Archaea	695	Open in IMG/M
3300005277\|Ga0065716_1018074	All Organisms → cellular organisms → Archaea	527	Open in IMG/M
3300005295\|Ga0065707_10017921	All Organisms → cellular organisms → Archaea	1329	Open in IMG/M
3300005341\|Ga0070691_10149330	All Organisms → cellular organisms → Archaea	1197	Open in IMG/M
3300005343\|Ga0070687_100375639	All Organisms → cellular organisms → Archaea	925	Open in IMG/M
3300005353\|Ga0070669_100445427	All Organisms → cellular organisms → Archaea	1066	Open in IMG/M
3300005364\|Ga0070673_101691836	All Organisms → cellular organisms → Archaea	599	Open in IMG/M
3300005365\|Ga0070688_101577753	All Organisms → cellular organisms → Archaea	535	Open in IMG/M
3300005366\|Ga0070659_100836993	All Organisms → cellular organisms → Archaea	802	Open in IMG/M
3300005441\|Ga0070700_100649964	All Organisms → cellular organisms → Archaea	832	Open in IMG/M
3300005446\|Ga0066686_10048538	All Organisms → cellular organisms → Archaea	2580	Open in IMG/M
3300005615\|Ga0070702_101146228	All Organisms → cellular organisms → Archaea	624	Open in IMG/M
3300005718\|Ga0068866_10113093	All Organisms → Viruses → Predicted Viral	1518	Open in IMG/M
3300006058\|Ga0075432_10036396	All Organisms → cellular organisms → Archaea	1711	Open in IMG/M
3300006844\|Ga0075428_100023451	All Organisms → cellular organisms → Archaea	6829	Open in IMG/M
3300006845\|Ga0075421_101415143	All Organisms → cellular organisms → Archaea	764	Open in IMG/M
3300006846\|Ga0075430_101000404	All Organisms → cellular organisms → Archaea	689	Open in IMG/M
3300009100\|Ga0075418_10416666	All Organisms → Viruses → Predicted Viral	1437	Open in IMG/M
3300009553\|Ga0105249_10677870	All Organisms → cellular organisms → Archaea	1090	Open in IMG/M
3300009793\|Ga0105077_106626	All Organisms → cellular organisms → Archaea	835	Open in IMG/M
3300009804\|Ga0105063_1031296	All Organisms → cellular organisms → Archaea	687	Open in IMG/M
3300009813\|Ga0105057_1121139	All Organisms → cellular organisms → Archaea	500	Open in IMG/M
3300009814\|Ga0105082_1100855	All Organisms → cellular organisms → Archaea	544	Open in IMG/M
3300009815\|Ga0105070_1081178	All Organisms → cellular organisms → Archaea	625	Open in IMG/M
3300011119\|Ga0105246_10271450	All Organisms → cellular organisms → Archaea	1356	Open in IMG/M
3300012476\|Ga0157344_1018046	All Organisms → cellular organisms → Archaea	584	Open in IMG/M
3300012483\|Ga0157337_1009090	All Organisms → cellular organisms → Archaea	743	Open in IMG/M
3300012488\|Ga0157343_1020685	All Organisms → cellular organisms → Archaea	594	Open in IMG/M
3300012501\|Ga0157351_1007583	All Organisms → cellular organisms → Archaea	926	Open in IMG/M
3300012909\|Ga0157290_10140204	All Organisms → cellular organisms → Archaea	763	Open in IMG/M
3300012972\|Ga0134077_10373663	All Organisms → cellular organisms → Archaea	611	Open in IMG/M
3300012976\|Ga0134076_10380580	All Organisms → cellular organisms → Archaea	626	Open in IMG/M
3300013100\|Ga0157373_11104512	All Organisms → cellular organisms → Archaea	595	Open in IMG/M
3300013102\|Ga0157371_10585807	All Organisms → cellular organisms → Archaea	829	Open in IMG/M
3300014326\|Ga0157380_11523060	All Organisms → cellular organisms → Archaea	722	Open in IMG/M
3300015200\|Ga0173480_10081061	All Organisms → Viruses → Predicted Viral	1533	Open in IMG/M
3300015200\|Ga0173480_11158555	All Organisms → cellular organisms → Archaea	519	Open in IMG/M
3300015358\|Ga0134089_10428518	All Organisms → cellular organisms → Archaea	569	Open in IMG/M
3300015371\|Ga0132258_11197615	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1920	Open in IMG/M
3300015372\|Ga0132256_100195211	All Organisms → cellular organisms → Archaea	2067	Open in IMG/M
3300015374\|Ga0132255_103262733	All Organisms → cellular organisms → Archaea	691	Open in IMG/M
3300017659\|Ga0134083_10561370	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300018031\|Ga0184634_10051581	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1703	Open in IMG/M
3300018054\|Ga0184621_10103965	All Organisms → cellular organisms → Archaea	1007	Open in IMG/M
3300018056\|Ga0184623_10137003	All Organisms → cellular organisms → Archaea	1132	Open in IMG/M
3300018061\|Ga0184619_10012461	All Organisms → cellular organisms → Archaea	3371	Open in IMG/M
3300018063\|Ga0184637_10420003	All Organisms → cellular organisms → Archaea	793	Open in IMG/M
3300018074\|Ga0184640_10091376	All Organisms → cellular organisms → Archaea	1315	Open in IMG/M
3300018077\|Ga0184633_10549140	All Organisms → cellular organisms → Archaea	553	Open in IMG/M
3300018081\|Ga0184625_10140848	All Organisms → cellular organisms → Archaea	1259	Open in IMG/M
3300018082\|Ga0184639_10496267	All Organisms → cellular organisms → Archaea	617	Open in IMG/M
3300018920\|Ga0190273_12236497	All Organisms → cellular organisms → Archaea	515	Open in IMG/M
3300019997\|Ga0193711_1021509	All Organisms → cellular organisms → Archaea	817	Open in IMG/M
3300020020\|Ga0193738_1033896	All Organisms → cellular organisms → Archaea	1577	Open in IMG/M
3300022534\|Ga0224452_1077173	All Organisms → cellular organisms → Archaea	1008	Open in IMG/M
3300022694\|Ga0222623_10154730	All Organisms → cellular organisms → Archaea	892	Open in IMG/M
3300022880\|Ga0247792_1075352	All Organisms → cellular organisms → Archaea	665	Open in IMG/M
3300022899\|Ga0247795_1069930	All Organisms → cellular organisms → Archaea	604	Open in IMG/M
3300023072\|Ga0247799_1009689	All Organisms → cellular organisms → Archaea	1385	Open in IMG/M
3300023261\|Ga0247796_1001920	All Organisms → cellular organisms → Archaea	2635	Open in IMG/M
3300025795\|Ga0210114_1010260	All Organisms → cellular organisms → Archaea	2111	Open in IMG/M
3300025796\|Ga0210113_1118884	All Organisms → cellular organisms → Archaea	516	Open in IMG/M
3300025918\|Ga0207662_10015498	All Organisms → cellular organisms → Archaea	4288	Open in IMG/M
3300025919\|Ga0207657_11040295	All Organisms → cellular organisms → Archaea	627	Open in IMG/M
3300025923\|Ga0207681_11384232	All Organisms → cellular organisms → Archaea	590	Open in IMG/M
3300025925\|Ga0207650_10845728	All Organisms → cellular organisms → Archaea	776	Open in IMG/M
3300025930\|Ga0207701_10080714	All Organisms → cellular organisms → Bacteria	2942	Open in IMG/M
3300025945\|Ga0207679_11473889	All Organisms → cellular organisms → Archaea	624	Open in IMG/M
3300025972\|Ga0207668_10339242	All Organisms → cellular organisms → Archaea	1253	Open in IMG/M
3300025972\|Ga0207668_11270348	All Organisms → cellular organisms → Archaea	662	Open in IMG/M
3300026116\|Ga0207674_11044342	All Organisms → cellular organisms → Archaea	786	Open in IMG/M
3300026142\|Ga0207698_10860515	All Organisms → cellular organisms → Archaea	912	Open in IMG/M
3300026142\|Ga0207698_11886825	All Organisms → cellular organisms → Archaea	612	Open in IMG/M
3300026748\|Ga0207575_102272	All Organisms → cellular organisms → Archaea	620	Open in IMG/M
3300026750\|Ga0207483_100638	All Organisms → cellular organisms → Archaea	1396	Open in IMG/M
3300026888\|Ga0209900_1009987	All Organisms → cellular organisms → Archaea	722	Open in IMG/M
3300027169\|Ga0209897_1047121	All Organisms → cellular organisms → Archaea	629	Open in IMG/M
3300027273\|Ga0209886_1051167	All Organisms → cellular organisms → Archaea	648	Open in IMG/M
3300027424\|Ga0209984_1009214	All Organisms → cellular organisms → Archaea	1252	Open in IMG/M
3300027526\|Ga0209968_1053126	All Organisms → cellular organisms → Archaea	706	Open in IMG/M
3300027956\|Ga0209820_1158595	All Organisms → cellular organisms → Archaea	626	Open in IMG/M
3300028380\|Ga0268265_10123817	All Organisms → cellular organisms → Archaea	2135	Open in IMG/M
3300028381\|Ga0268264_12662194	All Organisms → cellular organisms → Archaea	504	Open in IMG/M
3300031538\|Ga0310888_10005669	All Organisms → cellular organisms → Bacteria	4404	Open in IMG/M
3300031547\|Ga0310887_10398418	All Organisms → cellular organisms → Archaea	809	Open in IMG/M
3300031562\|Ga0310886_10267114	All Organisms → cellular organisms → Archaea	964	Open in IMG/M
3300031858\|Ga0310892_10253963	All Organisms → cellular organisms → Archaea	1086	Open in IMG/M
3300031892\|Ga0310893_10079868	All Organisms → cellular organisms → Archaea	1159	Open in IMG/M
3300032000\|Ga0310903_10029440	All Organisms → cellular organisms → Archaea	1952	Open in IMG/M
3300032075\|Ga0310890_11152349	All Organisms → cellular organisms → Archaea	629	Open in IMG/M
3300034818\|Ga0373950_0111199	All Organisms → cellular organisms → Archaea	598	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.25%
Host-Associated	Host-Associated	41.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	42.72%
Plants	Host-Associated → Plants	41.75%
Aquatic	Environmental → Aquatic	15.53%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.39%
Sediment	Environmental → Aquatic → Sediment	10.68%
Marine	Environmental → Aquatic → Marine	3.88%
Freshwater	Environmental → Aquatic → Freshwater	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.16%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.71%
Sand	Environmental → Terrestrial → Soil → Sand	7.77%
Loam	Environmental → Terrestrial → Soil → Loam	6.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.71%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.74%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	7.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000045	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis Col-0 old rhizosphere	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000652	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA	Host-Associated	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300003379	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM	Host-Associated	Open in IMG/M
3300003380	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM	Host-Associated	Open in IMG/M
3300003397	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM	Host-Associated	Open in IMG/M
3300003398	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM	Host-Associated	Open in IMG/M
3300003503	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM	Host-Associated	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009793	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026748	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05K1-12 (SPAdes)	Environmental	Open in IMG/M
3300026750	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-B (SPAdes)	Environmental	Open in IMG/M
3300026888	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027169	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027273	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARCol0oldRDRAFT_014563	3300000045	Arabidopsis Rhizosphere	NKLSKDVIEPVMRKFESYLKSKDVSSSVNVRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSSGEKISIQVDRLVTTGEVSQAMMQEYYDKEQITEEFINERLIRLIKSCFDKNWE*
F24TB_128214772	3300000550	Soil	VIEPVMRKFESYLKSKDVNSSVNVRSEVVSGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMVPEYYDKEQITEEFIKERLIRLIKSCFDKNWQSIYS*
ARCol0yngRDRAFT_100018013	3300000652	Arabidopsis Rhizosphere	SGKNPSIQFSLHFKLTHESRYPNIKFSSSGEKISIQVDRLVTTGEVSQAMMQEYYDKEQITEEFINERLIRLIKSCFDKNWE*
JGI11643J12802_107212792	3300000890	Soil	VMKKFESYLESKDVNSSVHIQSQIVAGKNPSIEFNLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVGQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
JGI26145J50221_10004813	3300003371	Arabidopsis Thaliana Rhizosphere	MRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
JGI26142J50222_1030451	3300003379	Arabidopsis Thaliana Rhizosphere	LSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRXIKSCFDKDWQSFYS*
JGI26144J50225_1030582	3300003380	Arabidopsis Thaliana Rhizosphere	ESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKEXLIRXIKSXFDKDWQSFYS*
JGI26133J50247_1024391	3300003397	Arabidopsis Thaliana Rhizosphere	KKEFNQLSKYVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRXIKSCFDKDWQSFYS*
JGI26130J50248_1003404	3300003398	Arabidopsis Thaliana Rhizosphere	QLSKYVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
JGI26141J51220_10144101	3300003503	Arabidopsis Thaliana Rhizosphere	FKKEFNQLSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0055468_101747571	3300003993	Natural And Restored Wetlands	DVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIEFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0055467_101615421	3300003996	Natural And Restored Wetlands	SQIVAGKNPSIEFSLHLKLTHESRYPNIEFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0066809_101051221	3300005168	Soil	LKKEFNKLSKDVIEPVMRKFESYLKSKDVNSSVNVRSEIVSGKNPSIEFILHLKLTHESRYPNIKFSSSGEKISIQEDRLITKDEVRQDMMPEYYDKEQITEEFIKERLIRLIKSCFDKNWQSIYS*
Ga0065716_10180741	3300005277	Arabidopsis Rhizosphere	KEFNKLSKDVIEPVMRKFESYLKSKDIISSVNVRSEIVAGKNPSIEFSLHFKLTHESRYPNIKFSSSGKKISIQVDRLVTKGEVNQAMVHEYCDKEQITEEFINERLIKLIKSCFDKNWE
Ga0065707_100179211	3300005295	Switchgrass Rhizosphere	VNSSVNVRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMPEYYDKEQITEEFIKERLIKLIKSCFDKNWQSIYS*
Ga0070691_101493303	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSYGEKISIQVDRLVTTGEVKQAMIQEYYDKEQITEEFINERLIRLIKSCFDKNWE*
Ga0070687_1003756393	3300005343	Switchgrass Rhizosphere	YPSVAFSLHLKLTHESKYPNIKFSLSGEKILVQEDRMMIVGQVRQDLPPEYYDKERITGEFIEKRLIRLIKSCFDKDWQ*
Ga0070669_1004454271	3300005353	Switchgrass Rhizosphere	RSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSYGEKISIQVDRLVTTGEVKQAMIQEYYDKEQITEEFINERLIRLIKSCFDKNWE*
Ga0070673_1016918361	3300005364	Switchgrass Rhizosphere	EFNKLSKDVIEPVMRKFESYLKSKDIISSVNVRSEIVAGKNPSIEFSLHFKLTHESRYPNIKFSSSGKKISIQVDRLVTKGEVNQAMVHEYCDKEQITEEFINERLIKLIKSCFDKNWE*
Ga0070688_1015777531	3300005365	Switchgrass Rhizosphere	EDFKEEFNQLSKDVIEPVMRKFESYLDSKDVNSSVNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0070659_1008369931	3300005366	Corn Rhizosphere	VNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0070700_1006499641	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	SQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0066686_100485387	3300005446	Soil	NVRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMPEYYDKEQITEEFIKERLIRLIKSCFDKNWQSIYS*
Ga0070702_1011462281	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	FSLHFKLTHESRYPNIKFSSSGKKISIQVDRLVTKGEVNQAMVHEYCDKEQITEEFINERLIKLIKSCFDKNWE*
Ga0068866_101130931	3300005718	Miscanthus Rhizosphere	KDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0075432_100363964	3300006058	Populus Rhizosphere	MRKFESYLKSKEVNSSVNVRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSFGEKISIQEDRLITKGEVRQDMMPEYYEKEQITEEFIKERLVRLIKSCFDKNWQSIYS*
Ga0075428_1000234516	3300006844	Populus Rhizosphere	IVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0075421_1014151431	3300006845	Populus Rhizosphere	HIQSEIVAEKNPSIEFSLHLKLTHESRYPNIKFSLSGEKISVQEDRLMTKGEVRQDMIPEYYDKEQITEEFVKERLIKLIKSCFDQDWQSFYS*
Ga0075430_1010004041	3300006846	Populus Rhizosphere	KNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0075418_104166661	3300009100	Populus Rhizosphere	IVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDNELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0105249_106778701	3300009553	Switchgrass Rhizosphere	IVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0105077_1066261	3300009793	Groundwater Sand	KKEFNQLSKDVIEPMMRKFESYLKCKDVNSSVNIQSQIVAGKNPSIEFNLHFKLTHESRYPNIKFSSSGKKISIQEERLMAKGEVRQDMMPEYYNKEQITEEFVKERLIRLIKSCFDKNWQSFYP*
Ga0105063_10312961	3300009804	Groundwater Sand	EDLKKEFNKLSKDVIEPVMRKFESYLKSKDVNSSVNVRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSSGEKISIQEDRLMTKGEVRQDMMPEYYDNEQITEEFVKERLIRLIKSCFDKNWQSFYS*
Ga0105057_11211391	3300009813	Groundwater Sand	GKNPSIEFSLHFKLTHESKYPNIKFSSSEEKISIQEDWLMAKGEVRQGIMPEYYDKEQITEEFIKERLIKLIKSCFDKNWESFYP*
Ga0105082_11008551	3300009814	Groundwater Sand	EPMMRKFESYLKSKDVNSSVNIQSQIVAGKNPSIEFSLSFKLTHESGYPNIKFSSSGKKISIQEERLMAKGEVSQDMMPEYYDKEQITKEFVKERLIRLIKSCFDKNWQSFYP*
Ga0105070_10811781	3300009815	Groundwater Sand	RKFESYLKCKDVNSSVNIQSQIVAGKNPSIEFSLSFKLTHESGYPNIKFSSSGKKISIQEERLMAKGEVSQDMMPEYYDKEQITKEFVKERLIRLIKSCFDKNWQSFYP*
Ga0105246_102714502	3300011119	Miscanthus Rhizosphere	EPEMRKFESYLESKDINSSVHIQSETEAGKYPSVAFSLHLKVTHESKYPNIKFSLSGEKILVQEDRMMIVGQVRQDLPPEYYDKERITGEFIEKRLIRLIKSCFDKDWQ*
Ga0157344_10180461	3300012476	Arabidopsis Rhizosphere	FKLTHESRYPNIKFSSSGEKISIQVDRLVTKGEVNQAMVQEYYDKEQITEEFINERLIRLIKSCFDKNWE*
Ga0157337_10090902	3300012483	Arabidopsis Rhizosphere	LKKEFNKLSKDVIEPVMRKFESYLKSKDIISSVNVRSEIVAGKNPSIEFSLHFKLTHESRYPNIKFSSSGKKISIQVDRLVTKGEVNQAMVHEYCDKEQITEEFINERLIKLIKSCFDKNWE*
Ga0157343_10206851	3300012488	Arabidopsis Rhizosphere	EDLKKEFNKLSKDVIEPVMRKFESYLKSKDVSSSVNVRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSSGEKISIQVDRLVTKGEVNQAMVQEYYDKEQITEEFINERLIRLIKSCFDKNWE*
Ga0157351_10075831	3300012501	Unplanted Soil	FNKLSKDVIEPVMRKFESYLKSKDIISSVNVRSEIVAGKNPSIEFSLHFKLTHESRYPNIKFSSSGKKISIQVDRLVTKGEVNQAMVHEYCDKEQITEEFINERLIKLIKSCFDKNWE*
Ga0157290_101402041	3300012909	Soil	LSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0134077_103736631	3300012972	Grasslands Soil	QIVAGKNPSIEFSLHFKLTHESKYPNIKFSSSGERISIEEDGLMAKGEVRQDMMPEYYDKEEITEEFIKERLIRLIKSCFDKNWQSFYP*
Ga0134076_103805801	3300012976	Grasslands Soil	FNKLSKDVIEPVMRKFESYLKSKDVNSSVNVRTEIVSGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMLEYYDKEQITEEFIKERLIRLIKSCFDKNWQSIYS*
Ga0157373_111045122	3300013100	Corn Rhizosphere	FNQLSKDVIEPVMRKFESYLDSKDVNSSVNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0157371_105858071	3300013102	Corn Rhizosphere	SKDVNSSVNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDNELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0157380_115230601	3300014326	Switchgrass Rhizosphere	KDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0173480_100810612	3300015200	Soil	ESYLDSKDVNSSVNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEASQDMIPEYYDNELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0173480_111585551	3300015200	Soil	KDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
Ga0134089_104285181	3300015358	Grasslands Soil	SEIVSGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMLEYYDKEQITEKFIKERLIRLIKSCFDKNWQSIYS*
Ga0132258_111976153	3300015371	Arabidopsis Rhizosphere	IQFSLHFKLTHESRYPNIKFSSSGEKISIQVDRLVTTGEVTQAMMQEYYDKEQITEEFINERLIRLIKSCFDKNWE*
Ga0132256_1001952111	3300015372	Arabidopsis Rhizosphere	SEIVAGKNPSIEFSLHFKLTHESRYPNIKFSSSGKKISIQVDRLVTKGEVNQAMVHEYCDKEQITEEFINERLIKLIKSCFDKNWE*
Ga0132255_1032627331	3300015374	Arabidopsis Rhizosphere	YLKSKEVISSVNVRSEIISGKNPSIQFSLHFKLTHESRYPNIKFSSFGEKISIQEDRLITKGEVRQDMMPEYYEKEQITEEFIKERLVRLIKSCFDKNWQSIYS*
Ga0134083_105613701	3300017659	Grasslands Soil	KDVNSSVNVRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSYAEKISIQEDRLITKGEVRQDMMPEYYDKEQITDEFIKERLIRLIKSCFDKNWQSIYS
Ga0184634_100515811	3300018031	Groundwater Sediment	LKNNSSINIQSQIVAGKNPSIEFSLHFKLTHESKYPNIKFSSSEEKISIQEDWLMAKGEVRQGIMPEYYDKEQITKEFIKERLIKLIKSCFDKNWESFYP
Ga0184621_101039651	3300018054	Groundwater Sediment	DFKKEFNQLSKDVIEPVMRKFESYLKSKDVNSSVNVRSETVSGNNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMPEYYDKEQITEEFIKERLIRLIKTCLDKNWESIYS
Ga0184623_101370031	3300018056	Groundwater Sediment	NKLSQHVIEPVMRKFESYLESKDVNSSVNIQSEIVAEKNPSIEFSLHLKLTYESRYPNIRFSLSGEKISLQEDRLTTKGEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWHSFY
Ga0184619_100124617	3300018061	Groundwater Sediment	VRSETVSGNNPSIEFILHFKLTHESRYPNIKFSSSGEKISMQEDRLITKGEVRQDMMPEYYDKEQITEEFIKERLIRLIKTCLDKNWESIYS
Ga0184637_104200031	3300018063	Groundwater Sediment	LKNNSSINIQSQIVAGKNPSIEFSLHFKLTHESKYPDIKFSSSEEKISIQEDWLMAKGEVRQGIMPEYYDKEQITEEFIKERLIKLIKSCFDKNWESFYP
Ga0184640_100913761	3300018074	Groundwater Sediment	KSKDVNSSVNVRSEIVSGKNPSIEFMLHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMPEYYDKEQITEEFIEERLIRLIKTCLDKNWESIYS
Ga0184633_105491401	3300018077	Groundwater Sediment	FESYLKSKDVNSSVNIQSQIVAGKNPSIEFSLHFKLTHESTYPNIKFSSSGKKISIQEERLMAKGEVRQDMMLEYYDKEQITEEFIKERLIKLIKSCFDKNWESFYP
Ga0184625_101408482	3300018081	Groundwater Sediment	EFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMPEYYDKEQITEEFIEERLIRLIKSCFDKNWQSIYP
Ga0184639_104962671	3300018082	Groundwater Sediment	FSKLSKDVIEPVMRKFESYLKSKDVNSSVNVRSEIVSGKNPSTEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMPEYYDKEQITEEFIEERLIRLIKSCFDKNWQSIYS
Ga0190273_122364971	3300018920	Soil	ESKDVNSNVHIQSEIVAGKNPSIEFSLHLKLTHESTYPNIKFSLSGEKISLQEDRLTTKGEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWHSFYS
Ga0193711_10215091	3300019997	Soil	FSLRLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0193738_10338963	3300020020	Soil	SLHLKLTHESRNPNIKFSLSGEKISVQEDRLMTKGEVRQDMIPEYYDNEQITEEFVKERLIRLIKACFDQDWQSFYS
Ga0224452_10771731	3300022534	Groundwater Sediment	SVNVRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMLEYYDKEQITEEFIKERLIRLIKSCFDKNWQSIYS
Ga0222623_101547302	3300022694	Groundwater Sediment	KFESYLKSKDVNSSVNIQSQIVAGKNPSIEFSLHFKLTHESRYPNIKFSSSGKKISIQEERLMAKGEVRQDMMLEYYDKEQITEEFVKEGLIRLIKSCFDKNWQSFYP
Ga0247792_10753521	3300022880	Soil	VMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0247795_10699302	3300022899	Soil	KEFNELSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0247799_10096892	3300023072	Soil	EDFKKEFNELSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0247796_10019203	3300023261	Soil	VNSSLHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0210114_10102601	3300025795	Natural And Restored Wetlands	SVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIEFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0210113_11188841	3300025796	Natural And Restored Wetlands	SKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIEFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207662_100154987	3300025918	Switchgrass Rhizosphere	YPSVAFSLHLKLTHESKYPNIKFSLSGEKILVQEDRMMIVGQVRQDLPPEYYDKERITGEFIEKRLIRLIKSCFDKDWQ
Ga0207657_110402951	3300025919	Corn Rhizosphere	SKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207681_113842321	3300025923	Switchgrass Rhizosphere	PSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207650_108457282	3300025925	Switchgrass Rhizosphere	IEPEMRKFESYLESKDINSSVHIQSETEAGKYPSVAFSLHLKLTHESKYPNIKFSLSGEKILVQEDRMMIVGQVRQDLPPEYYDKERITGEFIEKRLIRLIKSCFDKDWQ
Ga0207701_100807144	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	SKDVIEPVMRKFESYIDSKDVNSSVNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207679_114738891	3300025945	Corn Rhizosphere	VHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDNELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207668_103392422	3300025972	Switchgrass Rhizosphere	PSIQFSLHFKLTHESRYPNIKFSSSGEKISIQVDRLVTTGEARQAMMQEYYDKEQITEEFINERLIRLIKSCFDKNWE
Ga0207668_112703481	3300025972	Switchgrass Rhizosphere	LKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207674_110443421	3300026116	Corn Rhizosphere	SKLSQHVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFY
Ga0207698_108605151	3300026142	Corn Rhizosphere	AGKSPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLVTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207698_118868251	3300026142	Corn Rhizosphere	DINSSVHIQSETEAGKNPSVAFSLHLKLTHESKYPNIKFSLSGEKILVQEDRMMIVGQVRQDLPPEYYDKERITGEFIEKRLIRLIKSCFDKDWQ
Ga0207575_1022721	3300026748	Soil	VNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDNELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207483_1006381	3300026750	Soil	VRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMVPEYYDKEQITEEFIKERLIRLIKSCFDKNWQSIYS
Ga0209900_10099873	3300026888	Groundwater Sand	NSSVNIQSQIVAGKNPSIEFSLHFKLTHESRYPNIKFSSSGKKISIQEERLMAKGEVRQDMMPEYYDNEQITEEFVKERLIRLIKSCFDKNWQSFYP
Ga0209897_10471211	3300027169	Groundwater Sand	EFNQLSKDVIEPVMRKFESYLKSKDVNSSINIQSQIVAGKNPSIEFSLHFKLTHESKYPNIKFSSSEEKISIQEDWLMAKGEVRQGIMPEYYDKEQITEEFIKERLIKLIKSCFDKNWESFYP
Ga0209886_10511671	3300027273	Groundwater Sand	RKFESYLKSKDVNSSVNIQSQIVAGKNPSIEFSLHFKLTHESKYPNIKFSSSEEKISIQEDWLMAKGEVRQGIMPEYYDKEQITEEFIKERLIKLIKSCFDKNWESFYP
Ga0209984_10092141	3300027424	Arabidopsis Thaliana Rhizosphere	LSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0209968_10531262	3300027526	Arabidopsis Thaliana Rhizosphere	FSLHLKLTHESRYPNIKFLSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0209820_11585951	3300027956	Freshwater Sediment	ILSEIVAEKNPSIEFSLHLKLTHESRNPNIKFSLSGEKISVQEDRLMTKGEVRQDMIPEYYDNEQITEEFVKERLIRLIKACFDQDWQSFYS
Ga0268265_101238171	3300028380	Switchgrass Rhizosphere	LHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0268264_126621941	3300028381	Switchgrass Rhizosphere	FIKRGXDLKKEFNKLSKDVIEPVMRKFESYLKSKDVSSSVNVRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSYGEKISIQVDRLVTTGEVKQAMIQEYYDKEQITEEFINERLIRLIKSCFDKNWE
Ga0310888_100056691	3300031538	Soil	KNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0310887_103984181	3300031547	Soil	KKEFNELSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0310886_102671142	3300031562	Soil	IQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0310892_102539631	3300031858	Soil	EDFKKEFNQLSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0310893_100798681	3300031892	Soil	SQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0310903_100294403	3300032000	Soil	IEPVMRKFESYLDSKDVNSSVNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEERLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0310890_111523491	3300032075	Soil	GKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKGEVSQDTIPEYYDKELITEEFVKERLIRLIKSCFDKNWQSFYT
Ga0373950_0111199_329_598	3300034818	Rhizosphere Soil	NVRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSYGEKISIQVDRLVTTGEVKQAMIQEYYDKEQITEEFINERLIRLIKSCFDKNWE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098876

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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