NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096007

Metagenome Family F096007

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096007
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 46 residues
Representative Sequence MSDLAPAASPSVVAAASARRGESRWRVVARTAFPFLVVALAWEVT
Number of Associated Samples 96
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 40.95 %
% of genes near scaffold ends (potentially truncated) 99.05 %
% of genes from short scaffolds (< 2000 bps) 91.43 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (70.476 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(23.810 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.857 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70
1FG3_08893400
2JGI10214J12806_108834632
3C688J35102_1179830601
4Ga0062590_1023681722
5Ga0066397_100882242
6Ga0066395_107366291
7Ga0062594_1034134621
8Ga0066674_102335381
9Ga0070683_1004578102
10Ga0070690_1000371274
11Ga0066388_1077327901
12Ga0070668_1018915821
13Ga0070671_1002921041
14Ga0070673_1024066871
15Ga0070663_1008845762
16Ga0070664_1017376401
17Ga0066905_1000091756
18Ga0066905_1018880902
19Ga0066903_1000571111
20Ga0075365_106924781
21Ga0075023_1005202701
22Ga0075364_106379592
23Ga0075364_106851111
24Ga0075018_100590261
25Ga0075436_1011014542
26Ga0075435_1010592121
27Ga0105245_116629211
28Ga0114129_135231541
29Ga0105243_117322821
30Ga0075423_105435743
31Ga0126374_114735442
32Ga0126373_115176511
33Ga0126373_121391041
34Ga0126370_112456001
35Ga0126370_122593051
36Ga0126372_111271271
37Ga0126372_116331951
38Ga0126378_121547461
39Ga0126378_125301772
40Ga0126377_115637931
41Ga0134125_102302083
42Ga0126381_1033263341
43Ga0137391_100882834
44Ga0137389_110322181
45Ga0137368_101967972
46Ga0137385_104120261
47Ga0137375_104267532
48Ga0137360_103506442
49Ga0137407_117450662
50Ga0164298_105783141
51Ga0164302_119072751
52Ga0126369_109056281
53Ga0164308_121823161
54Ga0157374_101760221
55Ga0157375_135046221
56Ga0157380_116994312
57Ga0132255_1015543313
58Ga0132255_1032175491
59Ga0182040_101078601
60Ga0182040_105325891
61Ga0182038_101445271
62Ga0184625_102544002
63Ga0066662_101857461
64Ga0190270_134425731
65Ga0193743_11618911
66Ga0193730_11733701
67Ga0210392_100614081
68Ga0126371_136977661
69Ga0207694_118819311
70Ga0207668_117351421
71Ga0207641_122657831
72Ga0209805_14143592
73Ga0207442_1027312
74Ga0208762_10012662
75Ga0209656_103600141
76Ga0209465_104523082
77Ga0247821_112666231
78Ga0307307_102752371
79Ga0307284_103615562
80Ga0307308_106476111
81Ga0307501_100904802
82Ga0318541_102228521
83Ga0318538_100737671
84Ga0318528_104323411
85Ga0318573_103039491
86Ga0310915_101828881
87Ga0318542_106429552
88Ga0318494_105335332
89Ga0318566_100009179
90Ga0310917_102281521
91Ga0318517_101292982
92Ga0306919_100654793
93Ga0306919_114493871
94Ga0318536_103963342
95Ga0318520_105898022
96Ga0310912_110847551
97Ga0310913_111946451
98Ga0310909_108880411
99Ga0318507_101356192
100Ga0310911_106362921
101Ga0318556_101567132
102Ga0318506_103054762
103Ga0318540_104519681
104Ga0307472_1020362152
105Ga0310896_105368461
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 46.58%    β-sheet: 0.00%    Coil/Unstructured: 53.42%
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51015202530354045MSDLAPAASPSVVAAASARRGESRWRVVARTAFPFLVVALAWEVTCytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
70.5%29.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Bog Forest Soil
Groundwater Sediment
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grass Soil
Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Forest Soil
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Populus Endosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
9.5%6.7%12.4%2.9%2.9%20.0%4.8%6.7%2.9%3.8%3.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FG3_088934002189573005Grass SoilMADLAPTASRHVLAASTSAAAGESRWRVIARTAFPFLVVALLWEFTAYLGIFP
JGI10214J12806_1088346323300000891SoilMADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVVA
C688J35102_11798306013300002568SoilMSELAPTASPHVLTAATSAAAGESRWRVVARTAFPFLVVAVLWEFTAYL
Ga0062590_10236817223300004157SoilMADLAPTVSRHVLAAPASAAASESRWRVIARTAFPFLVVAVLWEFTAYLG
Ga0066397_1008822423300004281Tropical Forest SoilMSDLAPAASPNVLASGASARRGESRLKVVARTAFPFLVVALAWEVT
Ga0066395_1073662913300004633Tropical Forest SoilMSDLAPAASPTIVAAASARRGESRWWVVARTAFPFLVVALAWELTAHLG
Ga0062594_10341346213300005093SoilMSELAPTASPHVLTAATSAAAGESRWRVVARTAFPFLVVAVLWEFTAYLG
Ga0066674_1023353813300005166SoilMSDLAPATSASVLTAGTSAQRGESRWRVIARTAFPFLVVGIAWEITARL
Ga0070683_10045781023300005329Corn RhizosphereMADLAPTVSRHVLAAPASAAAGESRWRVVARTAFPFLVVAVLWEFTAYLGIFPR
Ga0070690_10003712743300005330Switchgrass RhizosphereMADLAPTVSRHVLAAPASAAAGESRWRVVARTAFPFLVVA
Ga0066388_10773279013300005332Tropical Forest SoilMSDLAPTASPQVIAAATPAAAGESRWRIVARTAFPFLVVALLWE
Ga0070668_10189158213300005347Switchgrass RhizosphereMADLAPTVSRHVLAAPASAAAGESRWRVVARTAFPFLVVAVLWEFTAYLGIF
Ga0070671_10029210413300005355Switchgrass RhizosphereMADLAPTVSRHVLAAPASAAAGESRWRVVARTAFPFLVVAVLWEFTAYLGIFPRKL
Ga0070673_10240668713300005364Switchgrass RhizosphereMADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVVAVLW
Ga0070663_10088457623300005455Corn RhizosphereMSDLAPTASPHVLTAATSAAAGESRWRVAARTAFPFLVVAVLWEFTAYLGIFP
Ga0070664_10173764013300005564Corn RhizosphereMADLAPTVSRHVLAAPASAAASESRWRVIARTAFPFLVVAV
Ga0066905_10000917563300005713Tropical Forest SoilMANFAPATSPHALTAGTSSQRGESRWRIMARTAFPFLVVALAWEATA
Ga0066905_10188809023300005713Tropical Forest SoilMSDLAPAASPTVVAAASARRGESRLKVVARTAFPFLVVALAWEVTAHLGIFPR
Ga0066903_10005711113300005764Tropical Forest SoilLSNTVLPNYRKPMSDIAPTTSPAALTAAISSPRGESRLRVVARTAFPFLVVALLWEITAYLGV
Ga0075365_1069247813300006038Populus EndosphereMSELAPAASTQLLAATTAAATGESRWRVAARTAFPFLVVGALWEVTAHLGVF
Ga0075023_10052027013300006041WatershedsMADLAPTASPHVLAASTSAAAGESRWRVVARTAFPFLVVALLWEFTAYL
Ga0075364_1063795923300006051Populus EndosphereMSDLAPAASPHVLAAGTPGARGESRLWVIARTAFP
Ga0075364_1068511113300006051Populus EndosphereMSDLAPTASPQVIAAATPATAGESRWRIVARTAFPFLV
Ga0075018_1005902613300006172WatershedsMSNLAPAASPHVLTAGTPLQRGESRWRVIARTAFPFLVVALAWEATAHAG
Ga0075436_10110145423300006914Populus RhizosphereMADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVV
Ga0075435_10105921213300007076Populus RhizosphereMSDLAPAASPSVVAAASARRGESRWRLVARTAFPFLVVALAWEVTAHLGI
Ga0105245_1166292113300009098Miscanthus RhizosphereMSELAPTASPHVLTAATSAAAGESRWRVVARTAFPFLVVAVLWEFTAY
Ga0114129_1352315413300009147Populus RhizosphereMSDLAPAASPHVLAAGTPGARGESRLWVIARTAFPFLV
Ga0105243_1173228213300009148Miscanthus RhizosphereMSDLAPTASPHVLTAATSAAAGESRWRVVARTAFPFLVVAVLWEFTAYLGIF
Ga0075423_1054357433300009162Populus RhizosphereMSDLAPAASPSVVAAASARRGESRWWVVARTAFPFLVVAL
Ga0126374_1147354423300009792Tropical Forest SoilMLDVHSISAAAKARAGYRESRWRVVARTAFPFVVVAAIWEGLAHAGIFPAR
Ga0126373_1151765113300010048Tropical Forest SoilMSDLAPAASPTVVAAASARRGESRWRIVARTAFPFLVVALLWEVTAH
Ga0126373_1213910413300010048Tropical Forest SoilMSDLAPAASPTVVAAASARRGESRWWVVARTAFPFLVVALLWEITA
Ga0126370_1124560013300010358Tropical Forest SoilMSDLAPAASPSVVAAASARRGESRWWLVARTAFPFLVVALAWEVT
Ga0126370_1225930513300010358Tropical Forest SoilMSDLAPAASPSVVAAASARRGESRWRVVARTAFPFLVVALAWEVTAHLGI
Ga0126372_1112712713300010360Tropical Forest SoilMSDLAPAASPSVVAAASARRGESRWRVVARTAFPFLVVALAWEVT
Ga0126372_1163319513300010360Tropical Forest SoilMSDLAPAASPNVLTGRTSARRGESRLRVVARTAFPFLVVALAWEVTAHLGIFPRK
Ga0126378_1215474613300010361Tropical Forest SoilMSDLAPAASPTVVAAASARRGESRWWVVARTAFPFLVVA
Ga0126378_1253017723300010361Tropical Forest SoilMSDVAPAASPNVLTAGTSARRGESRLRVVARTAFPFLVVALAWEVTAHLGIFP
Ga0126377_1156379313300010362Tropical Forest SoilMSDLAPAASPTVVAAASARRGESRLRVVARTAFPFLVVALAWEVAAHLGIFPRKL
Ga0134125_1023020833300010371Terrestrial SoilMADLAPTVSRHVLAAPASAAASESRWRVIARTAFP
Ga0126381_10332633413300010376Tropical Forest SoilMSDLAPAASPTVVAAASARRGESRWWVVARTAFPFLVVALLWEVTAH
Ga0137391_1008828343300011270Vadose Zone SoilMSELAPSASPNVLTAASARGESPLRLIARNAFPFLVVALLWEFTARLGVFP
Ga0137389_1103221813300012096Vadose Zone SoilMSELAPAVSAQVLAGTSAVHRESRLRVIARTAFPFLVVGLLWEVT
Ga0137368_1019679723300012358Vadose Zone SoilMSDLAPAASPHVLSGRISARRGESPLKVVARTAFPFVVVALAWELTA
Ga0137385_1041202613300012359Vadose Zone SoilMSDLAPAASPSVVAAASARRGESRWRVVARTAFPFLVVARAW
Ga0137375_1042675323300012360Vadose Zone SoilMSDLAPATSASVLTAGTSAQRGESRWRVIARTAFPFLVVGIAWEITAHLG
Ga0137360_1035064423300012361Vadose Zone SoilMSDLAPAASPSVVAAASARRGESRWWVVARTAFPFLVVALAWEITA
Ga0137407_1174506623300012930Vadose Zone SoilMSDLAPAASPHVLAAAASARRGESRWWVVARTAFPFLVVAL
Ga0164298_1057831413300012955SoilMADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVVALAWEFTAYLGIFPRK
Ga0164302_1190727513300012961SoilMSELAPTVSPHVLTSAPSAAAGESRWRVVARTAFPFLVVAVLWEF
Ga0126369_1090562813300012971Tropical Forest SoilMSDLAPTASPQVIAAATPDAAGESRWRIVARTAFPFLVVAL
Ga0164308_1218231613300012985SoilMSELAPTASPHVLTAATSAAAGESRWRVVARTAFPFLVVAVLWEFTAYLGIFPR
Ga0157374_1017602213300013296Miscanthus RhizosphereMADLAPTVSRHVLAAPASAGAGESRWRVVARTAFPFLVVAVLWEFTAYLGIFPRK
Ga0157375_1350462213300013308Miscanthus RhizosphereMSELAPTASPHVLTAATSAAAGESRWRVVARTAFPFLVVAVLWEFTAYLSIF
Ga0157380_1169943123300014326Switchgrass RhizosphereMADLAPTASRHVLAAPVSAAAESRWRVVARTAFPFLVVAVLWEFTAYLGIF
Ga0132255_10155433133300015374Arabidopsis RhizosphereMSDLAPTASPNVIAAEGSASRGESRLSAVARNSVPFLVVAVLW
Ga0132255_10321754913300015374Arabidopsis RhizosphereMSDLAPTASPHVVAAATPAAAGESRWRIVARTAFPFLVVALFWEVTAQL
Ga0182040_1010786013300016387SoilMSDLAPAASPTVVAAASARRGESRWWVVARTAFPF
Ga0182040_1053258913300016387SoilMSDLAPAASPTVVASASARRGESRWWVVARTAFPFLVVALAWEVTAD
Ga0182038_1014452713300016445SoilMSDLAPAASPSVVAAASARRGESRWWVVARTAFPFLVVALAWEVTAHL
Ga0184625_1025440023300018081Groundwater SedimentMADLAPTVSRHVFAAPASAAASESRWRVIARTAFPFLVVAVLWEFTAHL
Ga0066662_1018574613300018468Grasslands SoilMSDLAPATSASVLTAGTSAQRGESRWRVIARTAFPFLVVGIAWEI
Ga0190270_1344257313300018469SoilMSDLAPAASPGAIAAGISAARGESRLWVIARNAFPFLVVGLL
Ga0193743_116189113300019889SoilMADLAPTVSRHVLAPPASAAAGESRWRVVARTAFPFLLVAV
Ga0193730_117337013300020002SoilMADLAPTASPHVLAASTSAAAGESRWRVIARTAFPF
Ga0210392_1006140813300021475SoilMSTVAPAASPPLLPAGPAAQRGERRWRLIARTAFPFLVVALAWEATARLGIFPRK
Ga0126371_1369776613300021560Tropical Forest SoilMADLAPASSPYVLTAGTAARHGESRWRLIARNAFPFL
Ga0207694_1188193113300025924Corn RhizosphereMADLAPTVSRHVLAAPASAAASESRWRVIARTAFPF
Ga0207668_1173514213300025972Switchgrass RhizosphereMADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVVALAW
Ga0207641_1226578313300026088Switchgrass RhizosphereMADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVVALAWEF
Ga0209805_141435923300026542SoilMAELAPIASPDLVTPRAAARRGESRLRIVARNAFPFLVVAL
Ga0207442_10273123300026815SoilMADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVVAL
Ga0208762_100126623300026870SoilMADLAPTVSRHVLAAPASAAAGESRWRVVARTAFPFLVVAVLWEF
Ga0209656_1036001413300027812Bog Forest SoilMSQVAPAASPGVLVAAASSALGESRWLLIARTAFPFLVVALAWEV
Ga0209465_1045230823300027874Tropical Forest SoilMSDLAPAASPTVVAAASARRGESRWWVVARTAFPFLVVALAWELTAHLGVFPRK
Ga0247821_1126662313300028596SoilMADLAPTVSRHVLAAPASAAAGESRWRVVARTAFPFLVVAVLWE
Ga0307307_1027523713300028718SoilMADLAPTASRHVLAASTSAAAGESRWRVVARTAFPFLVVALLWEFTAS
Ga0307284_1036155623300028799SoilMSELAPTASPHVLTAATSAAAGESRWRVVARTAFPFLVV
Ga0307308_1064761113300028884SoilMADLAPTASRHVLAASTSAAAGESRWRVIARTAFPFLVVALLWEFTAYLGIFTRK
Ga0307501_1009048023300031152SoilMADLAPTASRLVLAASTSAAAGESRWRVIARTAFPFLVVALLW
Ga0318541_1022285213300031545SoilMSDLAPAASPTVVAAASARRGESRWWVVARTAFPFLVVALLWEVTAHLG
Ga0318538_1007376713300031546SoilMADLAPASSPYVLTAGTAVRHGESRWRIIARNAFPFLVVALAWEVTA
Ga0318528_1043234113300031561SoilMSDLAPTASPATLAAATSSARGESRLRVIARTAFP
Ga0318573_1030394913300031564SoilMSDLAPAASPSVVAAASARRGESRWWLVARTAFPFLVVALAWEVTA
Ga0310915_1018288813300031573SoilMSDLAPAASPTVVAAASARRGESRWWVVARTAFPFLVVALLWEVTAHLGIFP
Ga0318542_1064295523300031668SoilMADLAPASSPYVLTAGTAVRHGESRWRIIARNAFPFLVVALAWE
Ga0318494_1053353323300031751SoilMSDLAPAASPSVVAAASARRGESRWWVVARTAFPFLVVALAWEVTA
Ga0318566_1000091793300031779SoilMSDLAPAASPTIVAAASARRGESRWWVVARTAFPFLVVALAW
Ga0310917_1022815213300031833SoilMSDLAPAASPTVVAAASARRGESRLKVVARTAFPFL
Ga0318517_1012929823300031835SoilMSDLAPAASPSVVAAASARRGESRWWLVARTAFPF
Ga0306919_1006547933300031879SoilMSDLAPAASPTVVAAASARRGESRWWIVARTTFPFVVVALAWEVTAHLGI
Ga0306919_1144938713300031879SoilMSDLAPAASPTVVAAASARRGESRWWVVARTAFPFLVVALLWEVTAHL
Ga0318536_1039633423300031893SoilMSDLAPAASPSVVAAASARRGESRWWLVARTAFPFLVVALAW
Ga0318520_1058980223300031897SoilMSDLAPAASPTVVASASARRGESRWWVVARTAFPFLVVALAWEVTADLGI
Ga0310912_1108475513300031941SoilMADLAPASSPYVLTAGTAVRHGESRWRIIARNAFPFLVV
Ga0310913_1119464513300031945SoilMSDLAPAASPTIVAAASARRGESRWWVVARTAFPFLVV
Ga0310909_1088804113300031947SoilMSDLAPAASPSVVAAASARRGESRWWLVARTAFPFLVVAL
Ga0318507_1013561923300032025SoilMSDLAPAASPSVVAAASARRGESRWWVVARTAFPFLVVALAWEV
Ga0310911_1063629213300032035SoilMSDLAPAASPSVVAAASARRGESRWRVVARTAFPFL
Ga0318556_1015671323300032043SoilMADLAPAASPSVVIARASAQRGESRLWIIARNAFPFLVVALAW
Ga0318506_1030547623300032052SoilMSDLAPAASPTVVAAASARRGESRLKVVARTAFPFLVVALAWEVTAHLGIFP
Ga0318540_1045196813300032094SoilMSDLAPAASPSVVAAASARRGESRWRVVARTAFPFLVVALAWEVTAHL
Ga0307472_10203621523300032205Hardwood Forest SoilMSDLAPTASPNVLVAGAAAARGESRLRIVARNAFPFLVVGLLWEVTA
Ga0310896_1053684613300032211SoilMADLAPTVSRHVLAAPASAAAGESRWRVVARTAFPFLVVAVLWEFTAYLGIFP


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