NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F095049

Metagenome Family F095049

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F095049
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 51 residues
Representative Sequence IEKLLAELYPAMKMSDIKLLASMMDKKDKEELFDKMGFDKKQRKDYE
Number of Associated Samples 89
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 94.29 %
% of genes from short scaffolds (< 2000 bps) 87.62 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (80.952 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater
(32.381 % of family members)
Environment Ontology (ENVO) Unclassified
(77.143 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(80.952 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.67%    β-sheet: 0.00%    Coil/Unstructured: 53.33%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF07883Cupin_2 4.76
PF00294PfkB 2.86
PF00730HhH-GPD 1.90
PF13238AAA_18 0.95
PF12756zf-C2H2_2 0.95
PF01050MannoseP_isomer 0.95
PF01370Epimerase 0.95
PF01583APS_kinase 0.95
PF00383dCMP_cyt_deam_1 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG01223-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 1.90
COG0177Endonuclease IIIReplication, recombination and repair [L] 1.90
COG1059Thermostable 8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 1.90
COG1194Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairsReplication, recombination and repair [L] 1.90
COG22313-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamilyReplication, recombination and repair [L] 1.90
COG0529Adenylylsulfate kinase or related kinaseInorganic ion transport and metabolism [P] 0.95


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.95 %
All OrganismsrootAll Organisms19.05 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001850|RCM37_1093939Not Available628Open in IMG/M
3300002139|M3t2BS2_1746223Not Available610Open in IMG/M
3300002142|M2t2FKB2_1914011Not Available721Open in IMG/M
3300003411|JGI25911J50253_10179058Not Available594Open in IMG/M
3300003783|Ga0007850_1000501Not Available3979Open in IMG/M
3300003789|Ga0007835_1019635Not Available555Open in IMG/M
3300003804|Ga0007817_1000640All Organisms → cellular organisms → Archaea2961Open in IMG/M
3300003804|Ga0007817_1001628All Organisms → Viruses → Predicted Viral1863Open in IMG/M
3300004112|Ga0065166_10511563Not Available509Open in IMG/M
3300004240|Ga0007787_10519760Not Available595Open in IMG/M
3300004685|Ga0065177_1049685All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage788Open in IMG/M
3300004692|Ga0065171_1027479Not Available916Open in IMG/M
3300004770|Ga0007804_1138389Not Available613Open in IMG/M
3300004777|Ga0007827_10031995Not Available1261Open in IMG/M
3300004807|Ga0007809_10121034Not Available786Open in IMG/M
3300004807|Ga0007809_10235885Not Available521Open in IMG/M
3300005585|Ga0049084_10268716All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage570Open in IMG/M
3300005662|Ga0078894_10213531All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1747Open in IMG/M
3300005662|Ga0078894_10341597All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1356Open in IMG/M
3300006071|Ga0007876_1066162Not Available960Open in IMG/M
3300006072|Ga0007881_1047810Not Available1120Open in IMG/M
3300006072|Ga0007881_1172663All Organisms → cellular organisms → Bacteria → Proteobacteria523Open in IMG/M
3300006086|Ga0075019_10893803All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon569Open in IMG/M
3300006110|Ga0007871_1058207Not Available728Open in IMG/M
3300006114|Ga0007815_1067658Not Available724Open in IMG/M
3300006116|Ga0007807_1050523Not Available819Open in IMG/M
3300006116|Ga0007807_1070023Not Available665Open in IMG/M
3300006118|Ga0007859_1047655Not Available895Open in IMG/M
3300006118|Ga0007859_1092329All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage606Open in IMG/M
3300006127|Ga0007805_1073466Not Available744Open in IMG/M
3300006128|Ga0007828_1136560Not Available503Open in IMG/M
3300006875|Ga0075473_10086320Not Available1237Open in IMG/M
3300006875|Ga0075473_10457166Not Available515Open in IMG/M
3300007177|Ga0102978_1097851All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae3360Open in IMG/M
3300007559|Ga0102828_1118472Not Available651Open in IMG/M
3300008113|Ga0114346_1261609Not Available633Open in IMG/M
3300008114|Ga0114347_1199276Not Available668Open in IMG/M
3300009151|Ga0114962_10321273Not Available858Open in IMG/M
3300009151|Ga0114962_10434940Not Available704Open in IMG/M
3300009152|Ga0114980_10759374Not Available541Open in IMG/M
3300009155|Ga0114968_10566517Not Available604Open in IMG/M
3300009180|Ga0114979_10005896Not Available8097Open in IMG/M
3300009182|Ga0114959_10198576Not Available1040Open in IMG/M
3300009184|Ga0114976_10551665Not Available589Open in IMG/M
3300009419|Ga0114982_1077221All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1035Open in IMG/M
3300010157|Ga0114964_10123101Not Available1273Open in IMG/M
3300010160|Ga0114967_10075486Not Available2023Open in IMG/M
3300010334|Ga0136644_10279846Not Available972Open in IMG/M
3300010354|Ga0129333_11385370Not Available579Open in IMG/M
3300013093|Ga0164296_1085296Not Available1361Open in IMG/M
3300013093|Ga0164296_1215103Not Available737Open in IMG/M
(restricted) 3300013131|Ga0172373_10141867All Organisms → Viruses → Predicted Viral1723Open in IMG/M
(restricted) 3300013132|Ga0172372_10116422Not Available2206Open in IMG/M
(restricted) 3300013132|Ga0172372_10914388Not Available535Open in IMG/M
3300018410|Ga0181561_10348583Not Available680Open in IMG/M
3300018416|Ga0181553_10124797Not Available1560Open in IMG/M
3300020141|Ga0211732_1295786Not Available1902Open in IMG/M
3300020160|Ga0211733_11063776Not Available1126Open in IMG/M
3300020163|Ga0194039_1230340Not Available617Open in IMG/M
3300020172|Ga0211729_10086942Not Available515Open in IMG/M
3300020705|Ga0214177_1016709Not Available862Open in IMG/M
3300020716|Ga0214207_1016777Not Available905Open in IMG/M
3300020717|Ga0214248_1027682Not Available748Open in IMG/M
3300020721|Ga0214236_1048547Not Available535Open in IMG/M
3300021138|Ga0214164_1047403Not Available959Open in IMG/M
3300021138|Ga0214164_1079848Not Available646Open in IMG/M
3300021354|Ga0194047_10014586All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae3951Open in IMG/M
3300024346|Ga0244775_10553604Not Available936Open in IMG/M
3300024346|Ga0244775_10667384Not Available840Open in IMG/M
3300025369|Ga0208382_1006384Not Available2169Open in IMG/M
3300025381|Ga0208871_1012623All Organisms → Viruses → Predicted Viral1366Open in IMG/M
3300025381|Ga0208871_1039301Not Available653Open in IMG/M
3300025382|Ga0208256_1045575Not Available608Open in IMG/M
3300025392|Ga0208380_1023228All Organisms → Viruses → Predicted Viral1008Open in IMG/M
3300025396|Ga0208874_1045839Not Available621Open in IMG/M
3300025400|Ga0208387_1013177All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1602Open in IMG/M
3300025411|Ga0208865_1064677Not Available549Open in IMG/M
3300025423|Ga0208746_1025317Not Available1034Open in IMG/M
3300025466|Ga0208497_1017332Not Available1707Open in IMG/M
3300025470|Ga0208389_1013966All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1935Open in IMG/M
3300025598|Ga0208379_1104959All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon671Open in IMG/M
3300025777|Ga0208110_1026229Not Available599Open in IMG/M
3300025782|Ga0208867_1049952Not Available581Open in IMG/M
3300025783|Ga0208258_1036923Not Available700Open in IMG/M
3300026473|Ga0255166_1089001Not Available565Open in IMG/M
3300027631|Ga0208133_1058070Not Available928Open in IMG/M
3300027708|Ga0209188_1270792Not Available577Open in IMG/M
3300027741|Ga0209085_1370266Not Available524Open in IMG/M
3300027747|Ga0209189_1045547Not Available2152Open in IMG/M
3300027747|Ga0209189_1368657Not Available540Open in IMG/M
3300027749|Ga0209084_1027991Not Available2931Open in IMG/M
3300027763|Ga0209088_10252728Not Available731Open in IMG/M
3300027770|Ga0209086_10451242Not Available502Open in IMG/M
3300027808|Ga0209354_10255261Not Available703Open in IMG/M
3300027808|Ga0209354_10367450Not Available564Open in IMG/M
3300027963|Ga0209400_1372044Not Available522Open in IMG/M
3300028394|Ga0304730_1016076All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae4188Open in IMG/M
3300031951|Ga0315904_11217806Not Available577Open in IMG/M
3300032605|Ga0316232_1290933Not Available615Open in IMG/M
3300032753|Ga0316224_1183806All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria705Open in IMG/M
3300034020|Ga0335002_0474639Not Available675Open in IMG/M
3300034082|Ga0335020_0548404Not Available545Open in IMG/M
3300034093|Ga0335012_0520549Not Available561Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater32.38%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake18.10%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.62%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake6.67%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater3.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater3.81%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater2.86%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.86%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.86%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater1.90%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton1.90%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.90%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.90%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.90%
MarineEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine1.90%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.95%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.95%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.95%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.95%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.95%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface0.95%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001850Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2aEnvironmentalOpen in IMG/M
3300002139M3t2BS2 (117f)EnvironmentalOpen in IMG/M
3300002142M2t3t2 FKB2 (115f)EnvironmentalOpen in IMG/M
3300003411Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SDEnvironmentalOpen in IMG/M
3300003783Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08EnvironmentalOpen in IMG/M
3300003789Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08EnvironmentalOpen in IMG/M
3300003804Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09EnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300004240Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300004685Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)EnvironmentalOpen in IMG/M
3300004692Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (version 2)EnvironmentalOpen in IMG/M
3300004770Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07EnvironmentalOpen in IMG/M
3300004777Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07EnvironmentalOpen in IMG/M
3300004807Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07EnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006071Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09EnvironmentalOpen in IMG/M
3300006072Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006110Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09EnvironmentalOpen in IMG/M
3300006114Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09EnvironmentalOpen in IMG/M
3300006116Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09EnvironmentalOpen in IMG/M
3300006118Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07EnvironmentalOpen in IMG/M
3300006127Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09EnvironmentalOpen in IMG/M
3300006128Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07EnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300007177Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projectsEnvironmentalOpen in IMG/M
3300007559Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541EnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300009151Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009182Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300009419Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FTEnvironmentalOpen in IMG/M
3300010157Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaGEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300010334Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)EnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300013093Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaGEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300018410Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020163Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8mEnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020705Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnionEnvironmentalOpen in IMG/M
3300020716Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnionEnvironmentalOpen in IMG/M
3300020717Freshwater microbial communities from Trout Bog Lake, WI - 15JUN2009 hypolimnionEnvironmentalOpen in IMG/M
3300020721Freshwater microbial communities from Trout Bog Lake, WI - 28JUL2008 hypolimnionEnvironmentalOpen in IMG/M
3300021138Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnionEnvironmentalOpen in IMG/M
3300021354Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5mEnvironmentalOpen in IMG/M
3300021519Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5mEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025369Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)EnvironmentalOpen in IMG/M
3300025381Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)EnvironmentalOpen in IMG/M
3300025382Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 (SPAdes)EnvironmentalOpen in IMG/M
3300025392Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)EnvironmentalOpen in IMG/M
3300025396Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 (SPAdes)EnvironmentalOpen in IMG/M
3300025400Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 (SPAdes)EnvironmentalOpen in IMG/M
3300025411Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09 (SPAdes)EnvironmentalOpen in IMG/M
3300025423Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09 (SPAdes)EnvironmentalOpen in IMG/M
3300025466Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07 (SPAdes)EnvironmentalOpen in IMG/M
3300025470Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)EnvironmentalOpen in IMG/M
3300025598Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07 (SPAdes)EnvironmentalOpen in IMG/M
3300025777Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH13Jun08 (SPAdes)EnvironmentalOpen in IMG/M
3300025782Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08 (SPAdes)EnvironmentalOpen in IMG/M
3300025783Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09 (SPAdes)EnvironmentalOpen in IMG/M
3300026473Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8dEnvironmentalOpen in IMG/M
3300027631Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)EnvironmentalOpen in IMG/M
3300027708Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027747Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027749Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028394Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032605Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13EnvironmentalOpen in IMG/M
3300032753Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18013EnvironmentalOpen in IMG/M
3300034020Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055EnvironmentalOpen in IMG/M
3300034082Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
RCM37_109393923300001850Marine PlanktonLAELYPAWKLEDIKLLASLMTAQDKEELFDKMGFDKKQRKEYE*
M3t2BS2_174622333300002139MarineKLLAELHPTYKMDDIKLLASIMTEEEKKELFDKMGFDKKQRKEYE*NLEKSL*
M2t2FKB2_191401133300002142MarineELHPTYKMDDIKLLASIMTEEEKKELFDKMGFDKKQRKEYE*
JGI25911J50253_1017905833300003411Freshwater LakeAGKKGKADKIEKLLCELYPARKLDDIKVWAALMTKQDKTELFDKMGFDKKQRKEYE*
Ga0007850_100050113300003783FreshwaterYLKAGSKEKAVKIEKLLAELYPAYKMEDIKLMAKMMTKADKDELFDKMGFDKKQRKEYE*
Ga0007835_101963533300003789FreshwaterKKEKANKIEKLLCELYPAMKMDEIKMLAAMMDKKDRDELFDKMGFDKKQRKEYE*
Ga0007817_100064073300003804FreshwaterKLLCELYPAKKMDEIKLLASMMDKKDRDELFDMMGFDKKQRKEYE*
Ga0007817_100162813300003804FreshwaterSKEKAVKIEKLLAELYPAYKMEDIKLMAKMMTKADKDELFDKMGFDKKQRKEYE*
Ga0065166_1051156323300004112Freshwater LakeKSGTKGKANKIEKLLEELYPAMKLSDIKVLASLMDDKDKQELFDKMGFDKKQRKEYE*
Ga0007787_1051976023300004240Freshwater LakeDYTYLKAGTKGKANKIEKLLAELYPAMKLTDIKILASMMTDADKEELFDKMGFDKKQRKDYE*
Ga0065177_104968533300004685FreshwaterKEKANKIEKLLCELYPAMKMSDIKLLASMMTKEDKQELFDKMGFDKKQRKEYE*
Ga0065171_102747923300004692FreshwaterGTGASAYHPYLAGGKKEKAVKIEKLLAEIYPAKKMEDIKLLASLMDNKDKEELFDKMGFDKKQRKEYE*
Ga0007804_113838913300004770FreshwaterCELYPAKKMDEIKLLASMMDKKDRDELFDMMGFDKKQRKDYE*
Ga0007827_1003199533300004777FreshwaterYPAKKMDEIKLLASMMDKKDKDELFDMMGFDKKQRKEYE*
Ga0007809_1012103423300004807FreshwaterGVGTGVTAFHPYLAGGKKEKAVKIEKLLAELYPAKKMEDIKLLASLMSKEDKEELFDKMGFDKKQRKEYE*
Ga0007809_1023588513300004807FreshwaterASGAGVPAYHPYLAAGKKEKANKIEKLLCELYPAKKMDEIKLLASMMDKKDRDELFDMMGFDKKQRKEYE*
Ga0049084_1026871613300005585Freshwater LenticKLSEIKQLAAMMDKKDIEELFDKMGFDKKQRKDYE*
Ga0078894_1021353143300005662Freshwater LakeAGVNCYHPYLAAGKKEKANKIEKLLVELYPAMKMSDIKMLAAMMDKQDKEELFDKMGFDKKQRKEYE*
Ga0078894_1034159733300005662Freshwater LakeKYTYLKSGTKGKANKIEKLLEELYPAMKLSDIKVLASLMDDKDKQELFDKMGFDKKQRKEYE*
Ga0007876_106616213300006071FreshwaterFEKLLGEIYPAMKADEIKMLASMMDKNDREELFDSMGFDKKQRKEYE*
Ga0007881_104781013300006072FreshwaterKADEIKMLASMMDKNDREELFDSMGFDKKQRKEYE*
Ga0007881_117266313300006072FreshwaterPYLAQGKKEKIIKIEKLIAELNPAMKLEEVKMLAALMTKEDIKELFDNMGFDKKQRKEYE
Ga0075019_1089380333300006086WatershedsAMKMGDIKLLASLMTKKDKDELFDKMGFDKKQRKEYE*
Ga0007871_105820723300006110FreshwaterAGVPAYHPYLAAGKKEKANKIEKLLCELYPAKKMDEIKLLASMMDKKDRDELFDMMGFDKKQRKEYE*
Ga0007815_106765833300006114FreshwaterYLKASTKEKAVKIEKLLAELYPAMKLREIKQWAKMLSKEDKEELFDKMGFDKKQRKEYE*
Ga0007807_105052333300006116FreshwaterLEEVKMLAALMTKEDIKELFDNMGFDKKQRKEYE*
Ga0007807_107002333300006116FreshwaterYLAAGKKEKTNKIGKLLAELHPAMKMDEINMLAKMMTKQDCKELFDSLGFDAKQRKAYE*
Ga0007859_104765533300006118FreshwaterLLCEIYPAMKLEDIKVMASLMGKDDINELFDKMGFDKKQRKEYE*
Ga0007859_109232933300006118FreshwaterLYPAMKMSDIKLLASMMTKEDKQELFDKMGFDKKQRKEYE*
Ga0007805_107346613300006127FreshwaterAGKKEKANKIEKLLSDLHPAMKMNEIKMLASIMDKADKEELFDKMGFDKKQRKEYE*
Ga0007828_113656013300006128FreshwaterAGISCYHPYLAAGKKEKANKIEKLLCELHPAMKMEDIKLWAGMMDKADREELFDQMGFDKKQRKEYE*
Ga0075473_1008632013300006875AqueousEKVNKIEKLLAELYPTMKISEIKQLASMMDKKDCEELFDKMGFDKKQRKEYE*
Ga0075473_1045716623300006875AqueousPSMKTEDIKLLASMMTEEDKEELFEKMGFDQEQRKPYQ*
Ga0102978_109785173300007177Freshwater LakeELYPAKKLEDIKLQASMMTKQDCQELFDKLGFDKKQRKEYE*
Ga0102828_105316923300007559EstuarineLAELHPSYKIEDVKLLASLMTDTEKDELLDDMGFDKKQRKEYE*
Ga0102828_111847213300007559EstuarineKANKIERLLCELYPAMKMADIKLMASMMDKKDREELFDKMGFDKKQRKEYE*
Ga0114346_126160913300008113Freshwater, PlanktonSGVGAGFKVYHSYLAAGKAEKANKIEKLIAELNPTMKMSDVKLLTSLMDKNDIEDLFNKLGYDKKQRKAYE*
Ga0114347_119927623300008114Freshwater, PlanktonLIAELNPAMKMSDVKLQASLMDKNDIESLFDQLGFDKKQRKEYE*
Ga0114962_1032127313300009151Freshwater LakeKLLAELNPAMKMSDIKIWASMMSKKDKEDLFRMMGFDKKQQKEYE*
Ga0114962_1043494013300009151Freshwater LakeYKLEDVKLLASLMTDKEKQELFDNMGFDKKERKEYE*
Ga0114980_1075937423300009152Freshwater LakeASGKKEKANKIEKLLVQLYPAMKMSEIKMLAKMMDKKDCDELFDKMGFDKKQRKEYE*
Ga0114968_1056651723300009155Freshwater LakeCYHPYLAAGKKEKANKIERLLCELYPAMKMSDIKLMASMMEKKDKEELFDKMGFDKKQRKDYE*
Ga0114979_1000589613300009180Freshwater LakeKIEKLLVQLYPAMKMSEIKMLAKMMDKKDCDELFDKMGFDKKQRKEYE*
Ga0114959_1019857613300009182Freshwater LakeKEKANKIEKLLVQLYPAMKMDEIKMLGKMMDKDDIKELFDKMGFDKKQRKDYE*
Ga0114976_1055166513300009184Freshwater LakeKAGTKEKAEKIEKLLAELYPAMKLSDIKLQAKMMSKEDKNELFDKMGFDKKQRKEYE*
Ga0114982_107722113300009419Deep SubsurfaceVAGVNCYHPYLAAGKKEKANKIEKLLVELYPAMKMSDIKMLAAMMDKQDKEELFDKMGFDKKQRKEYE*
Ga0114964_1012310113300010157Freshwater LakeKKDTSFNKIETLIAELYPAMKYDEIKLMSSLMDKNDIKDLLDKMGFDKKQRKQYE*
Ga0114967_1007548653300010160Freshwater LakeYPAMKMDEIKLLVSLMDKQDKEELFDKMGFDKKQRKEYE*
Ga0136644_1027984633300010334Freshwater LakeCELYPTMKIKDIKIWASMMNKKDHEELFDKMGFDKKQRKEYE*
Ga0129333_1138537013300010354Freshwater To Marine Saline GradientGKKEKIDKIEKLLAELHPAKKIDEIKLLASMMDESDKKELFDKMGFDAKQRKEYE*
Ga0164296_108529643300013093FreshwaterIEKLLCELHPAMKMSEIKLLASMMDKKDCEELFDKMGFDKKQRRDYE*
Ga0164296_121510333300013093FreshwaterMKLEDIKVMAGLMDKKDIEELFDKMGFDKKQRKDYE*
(restricted) Ga0172373_1014186713300013131FreshwaterLIAELNPSMKISEVKMLAKMMDKKDCEELFDSMGFDKKQRKEYE*
(restricted) Ga0172372_1011642253300013132FreshwaterKISEVKMLAKMMDKKDCEELFDSMGFDKKQRKEYE*
(restricted) Ga0172372_1091438813300013132FreshwaterHPYLAAGKREKVNKIEKLIAELNPSMKISEVKMLAKMMDKKDCEELFDSMGFDKKERKEYE*
Ga0181561_1034858313300018410Salt MarshKLLAQLYPAMKMAELKMLAKMMTKEDKQELFDKMGFDKKQRKDYE
Ga0181553_1012479713300018416Salt MarshSKEKAQKIEKLLAQLYPAMKMAELKMLAKMMTKEDKQELFDKMGFDKKQRKDYE
Ga0211732_129578613300020141FreshwaterEKANKIEKLLEELYPSMKMSDIKLLGSLMTKKDCEELFDNMGFDKKQRKEYE
Ga0211733_1106377613300020160FreshwaterEKLLEELYPSMKMSDIKLLGSLMTKKDCEELFDNMGFDKKQRKEYE
Ga0194039_123034033300020163Anoxic Zone FreshwaterLFAACGAGTKMYHPYLKGASKEKAVKIEKLLCDLYPAMKMAEIKMLAKSMTKEDKIELFDKMGFDKKQRKEYE
Ga0211729_1008694213300020172FreshwaterPARKMSDIKLLASLMTDADKKELFDKMGFDKSQRKEYE
Ga0214177_101670933300020705FreshwaterLAAGKKEKANKIEKLLAELYPAMKMNEIKMLASMMDKKDKDELFDKMGFDKKQRKEYE
Ga0214207_101677713300020716FreshwaterKMDEIKLLASMMDKKDRDELFDMMGFDKKQRKEYE
Ga0214248_102768213300020717FreshwaterAGVPAYHPYLAAGKKEKANKIEKLLCELYPAKKMDEIKLLASMMDKKDRDELFDMMGFDKKQRKEYE
Ga0214236_104854723300020721FreshwaterATGTGMNIRYQYLAAGKKEKANKIEKLLAELHPAMKMSDIKLLASLMNKKDYEELFDMMGFDKKQRKSYE
Ga0214164_104740333300021138FreshwaterMKTKTTIKKEKVIKIEKLISELNPAMKLEEVKMLASLMSKDDIKELFDDMGFDKKQRKEY
Ga0214164_107984813300021138FreshwaterYPSMKLCDIKLQAKLMNKADKKELFDKMGFDKKQRKDYE
Ga0194047_1001458613300021354Anoxic Zone FreshwaterELYPAMKMSDIKLMASLMDKKDRKELFDMMGFDKKQRKAYE
Ga0194048_1024063413300021519Anoxic Zone FreshwaterELHPEYKIADIKLLASLMTEEEITILLKDMGFDKKQQKEYR
Ga0244775_1055360413300024346EstuarineVLHPTYKMDEIKLLASVMTEEEKLELFDKMGFDKKDRKEYQ
Ga0244775_1066738423300024346EstuarineIEKLLAELYPAMKMSDIKLLASMMDKKDKEELFDKMGFDKKQRKDYE
Ga0208382_100638453300025369FreshwaterAMKMEDIKLWAGMMDKSDREELFDQMGFDKKQRKEYE
Ga0208871_101262313300025381FreshwaterYPAKKMDEIKLLASMMDKKDRDELFDMMGFDKKQRKEYE
Ga0208871_103930113300025381FreshwaterNKIEKLLCEIYPAMKISDIKLLAGMMDKKDKEELFDKMGFDKKQRKDYE
Ga0208256_104557513300025382FreshwaterKKEKANKIEKLLCELYPAKKMDEIKLLASMMDKKDKDELFDMMGFDKKQRKEYE
Ga0208380_102322813300025392FreshwaterCELHPAMKMEDIKLWASMMDKADREELFDQMGFDKKQRKEYE
Ga0208874_104583933300025396FreshwaterIEKLLCELYPAMKMDEIKMLAAMMDKKDRDELFDKMGFDKKQRKEYE
Ga0208387_101317743300025400FreshwaterLNPAMKLEEVKMLAALMTKEDIKELFDNMGFDKKQRKEYE
Ga0208865_106467713300025411FreshwaterEYLPGPKQETNKIEKLLAELNPAMKLNDIKLWASMMTDQDKSELFDKMGFDKKQRKAYE
Ga0208746_102531713300025423FreshwaterAMKLEDIKLMASMMTKTDKNELFDKMGFDKKQRKEYE
Ga0208497_101733213300025466FreshwaterKAGTKEKAVKIEKLLAEIYPAMKLEDIKLMASMMTKTDKNELFDKMGFDKKQRKEYE
Ga0208389_101396613300025470FreshwaterKADEIKMLASMMDKNDREELFDSMGFDKKQRKEYE
Ga0208379_110495923300025598FreshwaterMKMSEIKMLGSMMTKQDKEELFSDMGLDKKQRKAYE
Ga0208110_102622933300025777FreshwaterLIAELYPAMKMNEIKLLSGMMTKEDIKELFDKMGFDKKQRKEYE
Ga0208867_104995213300025782FreshwaterAGKKEKANKIEKLLAELKPAMKMSDIKLWASMMTKADKEELFDKMGFDKKQRKEYE
Ga0208258_103692313300025783FreshwaterLAAGKKEKANKIEKLLCELYPAKKMDEIKLLASMMDKKDRDELFDMMGFDKKQRKEYE
Ga0255166_108900123300026473FreshwaterAYHPYLAAGKKEKANKIEKLLCEIYPARKLEDIKLMASMMSKKDKEELFDKMGFDKKQRKEYE
Ga0208133_105807013300027631EstuarinePTYKMDEIKLLASVMTDEEKLELFDKMGFDKKDRKEYQ
Ga0209188_127079223300027708Freshwater LakeLLCELYPATKMSDIKIMASMMDKKDREELFDKMGFDKKQRKDYE
Ga0209085_137026633300027741Freshwater LakeGSLDKFEKLIEELNPTMKNDEIKLLAKLMTDDERAELFDAMGFDKKQRKEYE
Ga0209189_104554713300027747Freshwater LakeCELYPTMKIKDIKIWASMMNKKDHEELFDKMGFDKKQRKEYE
Ga0209189_136865723300027747Freshwater LakeKAVKIEKLLAELYPARKMDEIKLQASLMTADDKTELFDKMGFDKKQRKDYE
Ga0209084_102799113300027749Freshwater LakeAELNPAMKMSDIKIWASMMSKKDKEDLFRMMGFDKKQQKEYE
Ga0209088_1025272823300027763Freshwater LakeKIEKLLVQLYPAMKMSEIKMLAKMMDKKDCDELFDKMGFDKKQRKEYE
Ga0209086_1045124223300027770Freshwater LakeYLKGPGKESANKIEKLLCELYPAMKMSDIKLMASMMEKKDKEELFDKMGFDKKQRKDYE
Ga0209354_1025526133300027808Freshwater LakeKIEKLLSEINPSMKLSEIKQLAAMMDKKDIEELFDKMGFDKKQRKEYE
Ga0209354_1036745013300027808Freshwater LakeCEIYPAMKMSDIKQMASMMDKKDCQELFDKVGLDKKQRKEYEX
Ga0209400_137204423300027963Freshwater LakeCYHPYLAAGKKEKANKIERLLCELYPAMKMSDIKLMASMMEKKDKEELFDKMGFDKKQRKDYE
Ga0304730_101607693300028394Freshwater LakeGTGVNCYHPYLAAGKKTKANKIEKLLAELHPTYKLEDIKLLASLMSAKDKTDLFDNMGFDKKQRKDYE
Ga0315904_1121780613300031951FreshwaterTGAKAYHPYLAAGKKEKAVKIEKLIAELNPAMKMSDVKLQASLMDKNDIESLFDQLGFDKKQRKEYE
Ga0316232_129093323300032605FreshwaterGTGMNIRYQYLAAGKKEKADKIEKLLAELHPAMKMSDIKLMASLMDKKDRKELFDMMGFDKKQRKIYE
Ga0316224_118380623300032753FreshwaterAGGKKEKAVKIEKLLAEIYPAKKMEDIKLLASLMDNKDKEELFDKMGFDKKQRKEYE
Ga0335002_0474639_512_6733300034020FreshwaterKEKANKIEKLLCEIYPAKKIEEIKMMASMMDKKDIEELFDMMGFDKKQRKDYE
Ga0335020_0548404_390_5003300034082FreshwaterMKMNEIKMLAKMMDKNDIKELFDKMGFDKKQRKEYE
Ga0335012_0520549_348_5393300034093FreshwaterMYHPYLAAGKKGKANKIEKLLAEIYPARKLEDIKTLASMMNKDDINELFDKMGFDKKQRKEYE


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.